CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ocbimv22002759m.g
(
Octopus bimaculoides
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Ocbimv22002759m.g
T048836_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nau
M03600_2.00
Drosophila melanogaster
DBAACAGCTGTYVH
DBRACAGCTGTTVH
SELEX
Nitta et al.(2015)
nau_1
0.884
0.923
nau
M03601_2.00
Drosophila melanogaster
NBRACAGCTGACRC
GYGTCAGCTGTYVN
SELEX
Nitta et al.(2015)
nau_2
0.884
0.923
nau
M03602_2.00
Drosophila melanogaster
RCGWCAGCTGWCGC
GCGWCAGCTGWCGY
SELEX
Nitta et al.(2015)
nau_3
0.884
0.923
nau
M05949_2.00
Drosophila melanogaster
CACCTGYY
RRCAGGTG
B1H
Zhu et al.(2011)
nau_da_SANGER_5_FBgn0002922
0.884
0.923
nau
M05950_2.00
Drosophila melanogaster
RACASCTGACGC
GCGTCAGSTGTY
B1H
Zhu et al.(2011)
nau_SANGER_5_FBgn0002922
0.884
0.923
hlh-1
M00746_2.00
Caenorhabditis elegans
RACAGCTGNN
NNCAGCTGTY
PBM
DeMasi et al.(2011)
HLH-1
0.855
0.846
hlh-1
M00929_2.00
Caenorhabditis elegans
GACAGCTG
CAGCTGTC
PBM
Grove et al.(2009)
HLH1
0.855
0.846
hlh-1
M08063_2.00
Caenorhabditis elegans
VAACAGYTGNY
RNCARCTGTTB
ChIP-seq
Mathelier et al.(2014)
MA0545.1
0.855
0.846
hlh-1
M09481_2.00
Caenorhabditis elegans
NNRNCARNTGNY
RNCANYTGNYNN
Misc
Heinz et al.(2010)
cElegans-Embryo-HLH1_modEncode
0.855
0.846
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ocbimv22002759m.p
bHLH
54
105
RRKAATLRERRRLRKVNEAFETLKRRTCPNPNQRLPKVEILRNAIEYIESLE
Links
Other
bHLH
family TFs
Other
Octopus bimaculoides
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CapteG36721
Capitella teleta
CapteG36721
I
0.914
CGI_10007380
Crassostrea gigas
CGI_10007380
I
0.914
EFV52759
Trichinella spiralis
EFV52759
I
0.884
nau
Drosophila melanogaster
FBgn0002922
D
0.884
GA10192
Drosophila pseudoobscura
FBgn0070251
I
0.884
GF18746
Drosophila ananassae
FBgn0095763
I
0.884
GG12413
Drosophila erecta
FBgn0104701
I
0.884
GH13904
Drosophila grimshawi
FBgn0121380
I
0.884
GI24830
Drosophila mojavensis
FBgn0147551
I
0.884
GL13832
Drosophila persimilis
FBgn0151437
I
0.884
GM23547
Drosophila sechellia
FBgn0178413
I
0.884
GD18361
Drosophila simulans
FBgn0189889
I
0.884
GJ24474
Drosophila virilis
FBgn0211554
I
0.884
GK22777
Drosophila willistoni
FBgn0224749
I
0.884
GE23932
Drosophila yakuba
FBgn0241076
I
0.884
GB55306
Apis mellifera
GB55306
I
0.884
NV10294
Nasonia vitripennis
NV10294
I
0.884
RPRC009735
Rhodnius prolixus
RPRC009735
I
0.884
SPU_021119
Strongylocentrotus purpuratus
SPU_021119
I
0.884
Cflo_03885--XP_001120527.1_APIME
Camponotus floridanus
Cflo_03885--XP_001120527.1_APIME
I
0.884
Hsal_05065--XP_001120527.1_APIME
Harpegnathos saltator
Hsal_05065--XP_001120527.1_APIME
I
0.884
fgenesh2_pg.scaffold_226000031
Branchiostoma floridae
fgenesh2_pg.scaffold_226000031
I
0.884
fgenesh2_pg.scaffold_226000032
Branchiostoma floridae
fgenesh2_pg.scaffold_226000032
I
0.884
fgenesh2_pg.scaffold_29000123
Branchiostoma floridae
fgenesh2_pg.scaffold_29000123
I
0.884
CLEC002330
Cimex lectularius
CLEC002330
I
0.884
LCUP007809
Lucilia cuprina
LCUP007809
I
0.884
LLOJ004446
Lutzomyia longipalpis
LLOJ004446
I
0.884
D917_06339
Trichinella nativa
D917_06339
I
0.884
D918_04086
Trichuris suis
D918_04086
I
0.884
nRc.2.0.1.g24248
Romanomermis culicivorax
nRc.2.0.1.g24248
I
0.884
SBAD_0001285401
Soboliphyme baturini
SBAD_0001285401
I
0.884
TMUE_s0045001800
Trichuris muris
TMUE_s0045001800
I
0.884
TTRE_0000002701
Trichuris trichiura
TTRE_0000002701
I
0.884
LotgiG99982
Lottia gigantea
LotgiG99982
I
0.879
Smp_167400
Schistosoma mansoni
Smp_167400
I
0.871
Sjc_0011830
Schistosoma japonicum
Sjc_0011830
I
0.871
SMU15001149
Schmidtea mediterranea
SMU15001149
I
0.871
A_07871
Schistosoma haematobium
A_07871
I
0.871
csin100742
Clonorchis sinensis
csin100742
I
0.871
D915_09890
Fasciola hepatica
D915_09890
I
0.871
ECPE_0001678601
Echinostoma caproni
ECPE_0001678601
I
0.871
T265_10140
Opisthorchis viverrini
T265_10140
I
0.871
TRE_0000306101
Trichobilharzia regenti
TRE_0000306101
I
0.871
HelroG188369
Helobdella robusta
HelroG188369
N
0.866
TC015855
Tribolium castaneum
TC015855
I
0.863
YQE_11476
Dendroctonus ponderosae
YQE_11476
I
0.863
LDEC009949
Leptinotarsa decemlineata
LDEC009949
I
0.863
CpipJ_CPIJ005345
Culex pipiens
CpipJ_CPIJ005345
I
0.860
AAEL014322
Aedes aegypti
AAEL014322
I
0.860
ADAC002492
Anopheles darlingi
ADAC002492
I
0.860
CPIJ005345
Culex quinquefasciatus
CPIJ005345
I
0.860
PHUM424120
Pediculus humanus
PHUM424120
I
0.860
Sakowv30008488m.g
Saccoglossus kowalevskii
Sakowv30008488m.g
I
0.860
AALB008334
Anopheles albimanus
AALB008334
I
0.860
AARA002094
Anopheles arabiensis
AARA002094
I
0.860
AATE018889
Anopheles atroparvus
AATE018889
I
0.860
ACHR010174
Anopheles christyi
ACHR010174
I
0.860
ACOM034431
Anopheles coluzzii
ACOM034431
I
0.860
ACUA006973
Anopheles culicifacies
ACUA006973
I
0.860
ADIR010448
Anopheles dirus
ADIR010448
I
0.860
AEPI006062
Anopheles epiroticus
AEPI006062
I
0.860
AFAF001067
Anopheles farauti
AFAF001067
I
0.860
AFUN011634
Anopheles funestus
AFUN011634
I
0.860
AMAM006832
Anopheles maculatus
AMAM006832
I
0.860
AMEM001613
Anopheles merus
AMEM001613
I
0.860
AMIN003460
Anopheles minimus
AMIN003460
I
0.860
AQUA000514
Anopheles quadriannulatus
AQUA000514
I
0.860
ASTEI05690
Anopheles stephensi
ASTEI05690
I
0.860
WUBG_05117
Wuchereria bancrofti
WUBG_05117
I
0.855
Bm1750
Brugia malayi
Bm1750
I
0.855
CBG13470
Caenorhabditis briggsae
CBG13470
I
0.855
CBN11281
Caenorhabditis brenneri
CBN11281
I
0.855
CJA13327
Caenorhabditis japonica
CJA13327
I
0.855
CRE17301
Caenorhabditis remanei
CRE17301
I
0.855
LOAG_16988
Loa loa
LOAG_16988
I
0.855
hlh-1
Caenorhabditis elegans
WBGene00001948
D
0.855
WBGene00247572
Onchocerca volvulus
WBGene00247572
I
0.855
BGLB008104
Biomphalaria glabrata
BGLB008104
N
0.855
ACOC_0000253201
Angiostrongylus costaricensis
ACOC_0000253201
I
0.855
ALUE_0000745301
Ascaris lumbricoides
ALUE_0000745301
I
0.855
ANCCEY_00328
Ancylostoma ceylanicum
ANCCEY_00328
I
0.855
ASIM_0001156501
Anisakis simplex
ASIM_0001156501
I
0.855
ASU_01867
Ascaris suum
ASU_01867
I
0.855
DICVIV_08170
Dictyocaulus viviparus
DICVIV_08170
I
0.855
EEL_0000993601
Elaeophora elaphi
EEL_0000993601
I
0.855
HCOI02168200
Haemonchus contortus
HCOI02168200
I
0.855
nAv.1.0.1.g02052
Acanthocheilonema viteae
nAv.1.0.1.g02052
I
0.855
nDi.2.2.2.g00288
Dirofilaria immitis
nDi.2.2.2.g00288
I
0.855
NECAME_14163
Necator americanus
NECAME_14163
I
0.855
nLs.2.1.2.g06915
Litomosoides sigmodontis
nLs.2.1.2.g06915
I
0.855
nOo.2.0.1.g00910
Onchocerca ochengi
nOo.2.0.1.g00910
I
0.855
OFLC_0000064301
Onchocerca flexuosa
OFLC_0000064301
I
0.855
TCLT_0000019401
Thelazia callipaeda
TCLT_0000019401
I
0.855
TELCIR_07640
Teladorsagia circumcincta
TELCIR_07640
I
0.855
TELCIR_14945
Teladorsagia circumcincta
TELCIR_14945
I
0.855
ECANG7_02004
Echinococcus canadensis
ECANG7_02004
I
0.850
EmuJ_001053100
Echinococcus multilocularis
EmuJ_001053100
I
0.850
HmN_000553800
Hymenolepis microstoma
HmN_000553800
I
0.850
HNAJ_0001324201
Hymenolepis nana
HNAJ_0001324201
I
0.850
MCOS_0000168001
Mesocestoides corti
MCOS_0000168001
I
0.850
SPER_0001779001
Spirometra erinaceieuropaei
SPER_0001779001
I
0.850
SPER_0002215301
Spirometra erinaceieuropaei
SPER_0002215301
I
0.850
SSLN_0000613901
Schistocephalus solidus
SSLN_0000613901
I
0.850
TASK_0000583801
Taenia asiatica
TASK_0000583801
I
0.850
TsM_000079400
Taenia solium
TsM_000079400
I
0.850
ENSMPUG00000011508
Mustela putorius furo
ENSMPUG00000011508
I
0.845
ENSAMXG00000000425
Astyanax mexicanus
ENSAMXG00000000425
I
0.844
myf6
Danio rerio
ENSDARG00000029830
I
0.844
Myf6
Dipodomys ordii
ENSDORG00000015435
I
0.844
ENSLACG00000010731
Latimeria chalumnae
ENSLACG00000010731
I
0.844
MYOG
Pteropus vampyrus
ENSPVAG00000013141
I
0.842