CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ALUE_0000745301
(
Ascaris lumbricoides
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
ALUE_0000745301
T053389_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
hlh-1
M00746_2.00
Caenorhabditis elegans
RACAGCTGNN
NNCAGCTGTY
PBM
DeMasi et al.(2011)
HLH-1
0.914
0.942
hlh-1
M00929_2.00
Caenorhabditis elegans
GACAGCTG
CAGCTGTC
PBM
Grove et al.(2009)
HLH1
0.914
0.942
hlh-1
M08063_2.00
Caenorhabditis elegans
VAACAGYTGNY
RNCARCTGTTB
ChIP-seq
Mathelier et al.(2014)
MA0545.1
0.914
0.942
hlh-1
M09481_2.00
Caenorhabditis elegans
NNRNCARNTGNY
RNCANYTGNYNN
Misc
Heinz et al.(2010)
cElegans-Embryo-HLH1_modEncode
0.914
0.942
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ALUE_0000745301-mRNA-1
bHLH
165
216
RRKAATMRERRRLRKVNEAFEVVKQRTCPNPNQRLPKVEILRSAIEYITKLE
Links
Other
bHLH
family TFs
Other
Ascaris lumbricoides
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
WUBG_05117
Wuchereria bancrofti
WUBG_05117
I
0.914
Bm1750
Brugia malayi
Bm1750
I
0.914
CBG13470
Caenorhabditis briggsae
CBG13470
I
0.914
CBN11281
Caenorhabditis brenneri
CBN11281
I
0.914
CJA13327
Caenorhabditis japonica
CJA13327
I
0.914
CRE17301
Caenorhabditis remanei
CRE17301
I
0.914
LOAG_16988
Loa loa
LOAG_16988
I
0.914
hlh-1
Caenorhabditis elegans
WBGene00001948
D
0.914
WBGene00247572
Onchocerca volvulus
WBGene00247572
I
0.914
ACOC_0000253201
Angiostrongylus costaricensis
ACOC_0000253201
I
0.914
ANCCEY_00328
Ancylostoma ceylanicum
ANCCEY_00328
I
0.914
ASIM_0001156501
Anisakis simplex
ASIM_0001156501
I
0.914
ASU_01867
Ascaris suum
ASU_01867
I
0.914
DICVIV_08170
Dictyocaulus viviparus
DICVIV_08170
I
0.914
EEL_0000993601
Elaeophora elaphi
EEL_0000993601
I
0.914
HCOI02168200
Haemonchus contortus
HCOI02168200
I
0.914
nAv.1.0.1.g02052
Acanthocheilonema viteae
nAv.1.0.1.g02052
I
0.914
nDi.2.2.2.g00288
Dirofilaria immitis
nDi.2.2.2.g00288
I
0.914
NECAME_14163
Necator americanus
NECAME_14163
I
0.914
nLs.2.1.2.g06915
Litomosoides sigmodontis
nLs.2.1.2.g06915
I
0.914
nOo.2.0.1.g00910
Onchocerca ochengi
nOo.2.0.1.g00910
I
0.914
OFLC_0000064301
Onchocerca flexuosa
OFLC_0000064301
I
0.914
TCLT_0000019401
Thelazia callipaeda
TCLT_0000019401
I
0.914
TELCIR_07640
Teladorsagia circumcincta
TELCIR_07640
I
0.914
TELCIR_14945
Teladorsagia circumcincta
TELCIR_14945
I
0.914
EVEC_0000720901
Enterobius vermicularis
EVEC_0000720901
I
0.884
SMUV_0000995901
Syphacia muris
SMUV_0000995901
I
0.884
Ppa-hlh-1
Pristionchus pacificus
PPA08246
I
0.863
BXY_0489100
Bursaphelenchus xylophilus
BXY_0489100
I
0.863
scaffold6-EXSNAP2012.144
Pristionchus exspectatus
scaffold6-EXSNAP2012.144
I
0.863
CapteG36721
Capitella teleta
CapteG36721
I
0.855
CGI_10007380
Crassostrea gigas
CGI_10007380
I
0.855
Ocbimv22002759m.g
Octopus bimaculoides
Ocbimv22002759m.g
I
0.855
TC015855
Tribolium castaneum
TC015855
I
0.846
YQE_11476
Dendroctonus ponderosae
YQE_11476
I
0.846
LDEC009949
Leptinotarsa decemlineata
LDEC009949
I
0.846
BTMF_0000215901
Brugia timori
BTMF_0000215901
N
0.777