POPTR_0006s02140 (Populus trichocarpa)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 POPTR_0006s02140 T180081_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.909 0.909
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.909 0.909
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.716 0.716
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s02140.1 FAR1 77 164

Links

Other FAR1 family TFs
Other Populus trichocarpa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_02411 Capronia coronata A1O1_02411 N
A1O3_00665 Capronia epimyces A1O3_00665 N
A1O5_00269 Cladophialophora psammophila A1O5_00269 N
A1O7_04599 Cladophialophora yegresii A1O7_04599 N
G647_04086 Cladophialophora carrionii G647_04086 N
PV04_04664 Capronia semiimmersa PV04_04664 N
PV05_06287 Exophiala xenobiotica PV05_06287 N
PV06_05231 Exophiala oligosperma PV06_05231 N
PV07_05503 Cladophialophora immunda PV07_05503 N
PV10_04001 Exophiala mesophila PV10_04001 N
PV11_02052 Exophiala sideris PV11_02052 N
Z517_06657 Fonsecaea pedrosoi Z517_06657 N
Z518_00720 Rhinocladiella mackenziei Z518_00720 N
Z519_00278 Cladophialophora bantiana Z519_00278 N