HPBE_0001638101 (Heligmosomoides bakeri)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 HPBE_0001638101 T190653_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FOXP1
M00836_2.00 		Homo sapiens
NRTMAACANN
NNTGTTKAYN		 PBM
Gabut et al.(2011)
pEX0123 		0.811 0.829
FOXP1
M00837_2.00 		Homo sapiens
DGTAAACAA
TTGTTTACH		 PBM
Gabut et al.(2011)
pEX0124 		0.811 0.829
FOXP1
M01976_2.00 		Homo sapiens
RTAAACAA
TTGTTTAY		 PBM
Weirauch et al.(2014)
pTH5656 		0.811 0.829
Foxp1
M00793_2.00 		Mus musculus
NRTMAAYAN
NTRTTKAYN		 PBM
Weirauch et al.(2013)
pTH3855 		0.811 0.829
FOXP1
M04811_2.00 		Homo sapiens
NTGTTTRYNRTNNNNNNBNAYRVWMAACAN
NTGTTKWBYRTNVNNNNNNAYNRYAAACAN		 SELEX
Yin et al.(2017)
FOXP1_eDBD_HT-SELEX 		0.811 0.829
FOXP1
M08115_2.00 		Homo sapiens
NDGTAAACAVNN
NNBTGTTTACHN		 ChIP-seq
Mathelier et al.(2014)
MA0481.2 		0.811 0.829
FOXP1
M09086_2.00 		Homo sapiens
RKAAACAVM
KBTGTTTMY		 Misc
Kulakovskiy et al.(2013)
FOXP1_HUMAN.H11MO.0.A 		0.811 0.829
FOXP1
M09541_2.00 		Homo sapiens
NDGTAAACAVNN
NNBTGTTTACHN		 Misc
Heinz et al.(2010)
H9-FOXP1_GSE31006 		0.811 0.829
FOXP1
M10536_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXP1_01 		0.811 0.829
FOXP1
M04812_2.00 		Homo sapiens
NTGTTTRYBRTNNNNNNBNAYRVWMAACAH
DTGTTKWBYRTNVNNNNNNAYVRYAAACAN		 SELEX
Yin et al.(2017)
FOXP1_eDBD_Methyl-HT-SELEX 		0.811 0.829
FoxP
M03753_2.00 		Drosophila melanogaster
AAACAACAACAA
TTGTTGTTGTTT		 SELEX
Nitta et al.(2015)
CG16899_1 		0.737 0.720
FoxP
M06201_2.00 		Drosophila melanogaster
VRTAAACAA
TTGTTTAYB		 B1H
Zhu et al.(2011)
CG16899_SANGER_5_FBgn0037735 		0.737 0.720
FoxP
M06202_2.00 		Drosophila melanogaster
VNNVBBAAAAAAAD
HTTTTTTTVVBNNB		 B1H
Zhu et al.(2011)
CG2052_SANGER_2.5_FBgn0039905 		0.737 0.720
FoxP
M06203_2.00 		Drosophila melanogaster
NNNNNRAAAAAAWNN
NNWTTTTTTYNNNNN		 B1H
Zhu et al.(2011)
CG2052_SOLEXA_2.5_FBgn0039905 		0.737 0.720
Foxp2
M00792_2.00 		Mus musculus
RTAAACAD
HTGTTTAY		 PBM
Weirauch et al.(2013)
pTH1288 		0.736 0.805
FOXP2
M05866_2.00 		Homo sapiens
RTAAAYAWNN
NNWTRTTTAY		 SMiLE-seq
Isakova et al.(2017)
FOXP2 		0.736 0.805
FOXP2
M08116_2.00 		Homo sapiens
NDGTAAACAVN
NBTGTTTACHN		 ChIP-seq
Mathelier et al.(2014)
MA0593.1 		0.736 0.805
FOXP2
M09089_2.00 		Homo sapiens
DGTAAACAV
BTGTTTACH		 Misc
Kulakovskiy et al.(2013)
FOXP2_HUMAN.H11MO.0.C 		0.736 0.805
Foxp2
M09101_2.00 		Mus musculus
NGTAAACAN
NTGTTTACN		 Misc
Kulakovskiy et al.(2013)
FOXP2_MOUSE.H11MO.0.A 		0.736 0.805
Foxj3
M00160_2.00 		Mus musculus
NRTAAACAHN
NDTGTTTAYN		 PBM
Badis et al.(2009)
Foxj3_0982 		0.669 0.463
Foxj3
M01981_2.00 		Mus musculus
VNHHAYANN
NNTRTDDNB		 PBM
Weirauch et al.(2014)
pTH6591 		0.669 0.463
Foxj3
M03055_2.00 		Mus musculus
ACGGACACAAT
ATTGTGTCCGT		 SELEX
Jolma et al.(2013)
Foxj3_1 		0.669 0.463
Foxj3
M03056_2.00 		Mus musculus
GTAAACARTMAACA
TGTTKAYTGTTTAC		 SELEX
Jolma et al.(2013)
Foxj3_2 		0.669 0.463
Foxj3
M03057_2.00 		Mus musculus
RTAAACAW
WTGTTTAY		 SELEX
Jolma et al.(2013)
Foxj3_3 		0.669 0.463
Foxj3
M03058_2.00 		Mus musculus
RTAAACAWAAACA
TGTTTWTGTTTAY		 SELEX
Jolma et al.(2013)
Foxj3_4 		0.669 0.463
Foxj3
M09102_2.00 		Mus musculus
WAAMMATAAACAN
NTGTTTATKKTTW		 Misc
Kulakovskiy et al.(2013)
FOXJ3_MOUSE.H11MO.0.A 		0.669 0.463
FOXJ3
M03046_2.00 		Homo sapiens
RTAAAVAA
TTBTTTAY		 SELEX
Jolma et al.(2013)
FOXJ3_1 		0.668 0.463
FOXJ3
M03047_2.00 		Homo sapiens
GTAAACARTMAACA
TGTTKAYTGTTTAC		 SELEX
Jolma et al.(2013)
FOXJ3_2 		0.668 0.463
FOXJ3
M03048_2.00 		Homo sapiens
GTAAACATAAACA
TGTTTATGTTTAC		 SELEX
Jolma et al.(2013)
FOXJ3_3 		0.668 0.463
FOXJ3
M02736_2.00 		Homo sapiens
AAACAATAAACA
TGTTTATTGTTT		 SELEX
Jolma et al.(2010)
FOXJ3_dimer 		0.668 0.463
FOXJ3
M02737_2.00 		Homo sapiens
RTAAACAW
WTGTTTAY		 SELEX
Jolma et al.(2010)
FOXJ3_monomer 		0.668 0.463
FOXJ3
M04859_2.00 		Homo sapiens
DYGTMAACAH
DTGTTKACRH		 SELEX
Yin et al.(2017)
FOXJ3_eDBD_HT-SELEX 		0.668 0.463
FOXJ3
M09098_2.00 		Homo sapiens
WAAMMATAAACAN
NTGTTTATKKTTW		 Misc
Kulakovskiy et al.(2013)
FOXJ3_HUMAN.H11MO.0.A 		0.668 0.463
FOXJ3
M04860_2.00 		Homo sapiens
RYGTMAACAH
DTGTTKACRY		 SELEX
Yin et al.(2017)
FOXJ3_eDBD_Methyl-HT-SELEX 		0.668 0.463
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HPBE_0001638101-mRNA-1 Forkhead 139 223

Links

Other Forkhead family TFs
Other Heligmosomoides bakeri TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004752 Ricinus communis 29929.m004752 I 0.000
AMTR_s00019p00208460 Amborella trichopoda AMTR_s00019p00208460 I 0.000
AMTR_s00049p00081480 Amborella trichopoda AMTR_s00049p00081480 I 0.000
Aquca_011_00344 Aquilegia coerulea Aquca_011_00344 I 0.000
Aquca_056_00105 Aquilegia coerulea Aquca_056_00105 I 0.000
BGIOSGA000304 Oryza indica BGIOSGA000304 I 0.000
RR21 Oryza indica BGIOSGA012149 I 0.000
Bo6g098710 Brassica oleracea Bo6g098710 I 0.000
Bo6g105120 Brassica oleracea Bo6g105120 I 0.000
Bostr.26959s0139 Boechera stricta Bostr.26959s0139 I 0.000
Bra004076 Brassica rapa Bra004076 I 0.000
Bra004245 Brassica rapa Bra004245 I 0.000
BRADI1G47400 Brachypodium distachyon BRADI1G47400 I 0.000
BRADI1G69480 Brachypodium distachyon BRADI1G69480 I 0.000
BRADI3G54120 Brachypodium distachyon BRADI3G54120 I 0.000
Cagra.2261s0012 Capsella grandiflora Cagra.2261s0012 I 0.000
Carubv10020133m.g Capsella rubella Carubv10020133m.g I 0.000
cassava13981.valid.m1 Manihot esculenta cassava13981.valid.m1 I 0.000
cassava29171.valid.m1 Manihot esculenta cassava29171.valid.m1 I 0.000
Ca_11309 Cicer arietinum Ca_11309 I 0.000
Ciclev10004989m.g Citrus clementina Ciclev10004989m.g I 0.000
Ciclev10031052m.g Citrus clementina Ciclev10031052m.g I 0.000
Cla023064 Citrullus lanatus Cla023064 I 0.000
Cucsa.394720 Cucumis sativus Cucsa.394720 I 0.000
Eucgr.H04693 Eucalyptus grandis Eucgr.H04693 I 0.000
Eucgr.H04694 Eucalyptus grandis Eucgr.H04694 I 0.000
evm.TU.supercontig_86.17 Carica papaya evm.TU.supercontig_86.17 I 0.000
F775_27736 Aegilops tauschii F775_27736 I 0.000
F775_32153 Aegilops tauschii F775_32153 I 0.000
GLYMA05G27670 Glycine max GLYMA05G27670 I 0.000
GLYMA08G10650 Glycine max GLYMA08G10650 I 0.000
GLYMA11G37480 Glycine max GLYMA11G37480 I 0.000
GLYMA13G22320 Glycine max GLYMA13G22320 N 0.000
GLYMA18G01434 Glycine max GLYMA18G01434 I 0.000
Gorai.005G173300 Gossypium raimondii Gorai.005G173300 I 0.000
GRMZM2G099797 Zea mays GRMZM2G099797 I 0.000
GRMZM2G100318 Zea mays GRMZM2G100318 I 0.000
GRMZM2G126834 Zea mays GRMZM2G126834 I 0.000
GRMZM2G177220 Zea mays GRMZM2G177220 I 0.000
GSMUA_Achr3G14630_001 Musa acuminata GSMUA_Achr3G14630_001 I 0.000
GSMUA_Achr8G32070_001 Musa acuminata GSMUA_Achr8G32070_001 I 0.000
LjSGA_022114.1 Lotus japonicus LjSGA_022114.1 I 0.000
LPERR01G35510 Leersia perrieri LPERR01G35510 I 0.000
LPERR03G08040 Leersia perrieri LPERR03G08040 I 0.000
Lus10006446.g Linum usitatissimum Lus10006446.g I 0.000
Lus10011389.g Linum usitatissimum Lus10011389.g I 0.000
MDP0000320381 Malus domestica MDP0000320381 I 0.000
mgf000016m Mimulus guttatus mgf000016m I 0.000
MLOC_23250 Hordeum vulgare MLOC_23250 I 0.000
MLOC_76165 Hordeum vulgare MLOC_76165 I 0.000
MTR_3g086100 Medicago truncatula MTR_3g086100 I 0.000
MTR_8g079940 Medicago truncatula MTR_8g079940 I 0.000
OB01G49660 Oryza brachyantha OB01G49660 I 0.000
OB03G19140 Oryza brachyantha OB03G19140 I 0.000
OBART01G40940 Oryza barthii OBART01G40940 I 0.000
OBART03G08950 Oryza barthii OBART03G08950 I 0.000
OGLUM01G45120 Oryza glumaepatula OGLUM01G45120 I 0.000
OGLUM03G09080 Oryza glumaepatula OGLUM03G09080 I 0.000
OLONG_002370 Oryza longistaminata OLONG_002370 I 0.000
OLONG_004141 Oryza longistaminata OLONG_004141 I 0.000
OMERI01G37950 Oryza meridionalis OMERI01G37950 I 0.000
OMERI03G08390 Oryza meridionalis OMERI03G08390 I 0.000
ONIVA01G45980 Oryza nivara ONIVA01G45980 I 0.000
ONIVA06G01160 Oryza nivara ONIVA06G01160 I 0.000
OPUNC01G39740 Oryza punctata OPUNC01G39740 I 0.000
OPUNC03G08640 Oryza punctata OPUNC03G08640 I 0.000
orange1.1g007940m.g Citrus sinensis orange1.1g007940m.g I 0.000
ORGLA01G0348700 Oryza glaberrima ORGLA01G0348700 I 0.000
ORGLA03G0086800 Oryza glaberrima ORGLA03G0086800 I 0.000
ORUFI01G44260 Oryza rufipogon ORUFI01G44260 I 0.000
ORUFI03G09090 Oryza rufipogon ORUFI03G09090 I 0.000
RR26 Oryza sativa OS01G0904700 I 0.000
RR21 Oryza sativa OS03G0224200 I 0.000
Pavir.Ea03527 Panicum virgatum Pavir.Ea03527 I 0.000
Pavir.Ia04946 Panicum virgatum Pavir.Ia04946 I 0.000
Pavir.Ib00921 Panicum virgatum Pavir.Ib00921 I 0.000
Pavir.J23046 Panicum virgatum Pavir.J23046 I 0.000
PGSC0003DMG400011980 Solanum tuberosum PGSC0003DMG400011980 I 0.000
PK02601.1 Cannabis sativa PK02601.1 I 0.000
PK07924.1 Cannabis sativa PK07924.1 D 0.000
Pm006838 Prunus mume Pm006838 I 0.000
POPTR_0008s13490 Populus trichocarpa POPTR_0008s13490 I 0.000
POPTR_0008s18130 Populus trichocarpa POPTR_0008s18130 I 0.000
POPTR_0010s06290 Populus trichocarpa POPTR_0010s06290 I 0.000
PRUPE_ppa002679mg Prunus persica PRUPE_ppa002679mg I 0.000
SapurV1A.0015s0530 Salix purpurea SapurV1A.0015s0530 I 0.000
SapurV1A.0152s0010 Salix purpurea SapurV1A.0152s0010 I 0.000
SapurV1A.0206s0280 Salix purpurea SapurV1A.0206s0280 I 0.000
SapurV1A.0629s0180 Salix purpurea SapurV1A.0629s0180 I 0.000
Sb01g042400 Sorghum bicolor Sb01g042400 I 0.000
Sb03g043080 Sorghum bicolor Sb03g043080 I 0.000
ARR11 Arabidopsis lyrata scaffold_201596.1 I 0.000
Si000815m.g Setaria italica Si000815m.g I 0.000
Si034517m.g Setaria italica Si034517m.g I 0.000
Solyc05g014260.2 Solanum lycopersicum Solyc05g014260.2 I 0.000
TCM_010701 Theobroma cacao TCM_010701 I 0.000
Thhalv10018396m.g Eutrema salsugineum Thhalv10018396m.g I 0.000
TRAES3BF094200030CFD_g Triticum aestivum TRAES3BF094200030CFD_g I 0.000
TRAES3BF107400040CFD_g Triticum aestivum TRAES3BF107400040CFD_g I 0.000
Traes_3AL_9D2735F60 Triticum aestivum Traes_3AL_9D2735F60 I 0.000
Traes_3B_D9F27151E Triticum aestivum Traes_3B_D9F27151E I 0.000
Traes_3DL_D82CA7827 Triticum aestivum Traes_3DL_D82CA7827 I 0.000
Traes_4AS_6486B493A Triticum aestivum Traes_4AS_6486B493A I 0.000
Traes_4BL_941E7DE4D Triticum aestivum Traes_4BL_941E7DE4D I 0.000
Traes_4DL_2527CA8BF Triticum aestivum Traes_4DL_2527CA8BF I 0.000
Traes_6AL_9C9D677D4 Triticum aestivum Traes_6AL_9C9D677D4 I 0.000
Traes_6BL_790C095EE Triticum aestivum Traes_6BL_790C095EE I 0.000
Traes_6DL_D1C9CE275 Triticum aestivum Traes_6DL_D1C9CE275 I 0.000
TRIUR3_25342 Triticum urartu TRIUR3_25342 I 0.000
ARR11 Vitis vinifera VIT_01s0010g02230 I 0.000
VIT_17s0000g10100 Vitis vinifera VIT_17s0000g10100 I 0.000