POPTR_0008s18130 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0008s18130 T278359_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07924.1
M01278_2.00 		Cannabis sativa
NGATHYNNN
NNNRDATCN		 PBM
Lambert et al.(2019)
pTH11431 		0.891 0.979
ARR11
M00872_2.00 		Arabidopsis thaliana
NRATHHNNN
NNNDDATYN		 PBM
Franco-Zorrilla et al.(2014)
ARR11 		0.749 0.872
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s18130.1 Myb 250 318

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0206s0280 Salix purpurea SapurV1A.0206s0280 I 0.909
GLYMA08G10650 Glycine max GLYMA08G10650 I 0.891
Pm006838 Prunus mume Pm006838 I 0.891
GLYMA05G27670 Glycine max GLYMA05G27670 I 0.891
cassava13981.valid.m1 Manihot esculenta cassava13981.valid.m1 I 0.891
Cla023064 Citrullus lanatus Cla023064 I 0.891
GLYMA18G01434 Glycine max GLYMA18G01434 I 0.891
MTR_8g079940 Medicago truncatula MTR_8g079940 I 0.891
PRUPE_ppa002679mg Prunus persica PRUPE_ppa002679mg I 0.891
TCM_010701 Theobroma cacao TCM_010701 I 0.891
cassava29171.valid.m1 Manihot esculenta cassava29171.valid.m1 I 0.891
ARR11 Vitis vinifera VIT_01s0010g02230 I 0.891
GLYMA11G37480 Glycine max GLYMA11G37480 I 0.891
Cucsa.394720 Cucumis sativus Cucsa.394720 I 0.891
PK07924.1 Cannabis sativa PK07924.1 D 0.891
MDP0000320381 Malus domestica MDP0000320381 I 0.891
LjSGA_022114.1 Lotus japonicus LjSGA_022114.1 I 0.891
evm.TU.supercontig_86.17 Carica papaya evm.TU.supercontig_86.17 I 0.891
Gorai.005G173300 Gossypium raimondii Gorai.005G173300 I 0.891
MTR_3g086100 Medicago truncatula MTR_3g086100 I 0.889
ONIVA01G45980 Oryza nivara ONIVA01G45980 I 0.880
RR26 Oryza sativa OS01G0904700 I 0.880
OMERI01G37950 Oryza meridionalis OMERI01G37950 I 0.880
ORUFI01G44260 Oryza rufipogon ORUFI01G44260 I 0.880
ORGLA01G0348700 Oryza glaberrima ORGLA01G0348700 I 0.880
OPUNC01G39740 Oryza punctata OPUNC01G39740 I 0.880
OLONG_004141 Oryza longistaminata OLONG_004141 I 0.880
POPTR_0010s06290 Populus trichocarpa POPTR_0010s06290 I 0.880
SapurV1A.0629s0180 Salix purpurea SapurV1A.0629s0180 I 0.880
Pavir.J23046 Panicum virgatum Pavir.J23046 I 0.880
OGLUM01G45120 Oryza glumaepatula OGLUM01G45120 I 0.880
Pavir.Ea03527 Panicum virgatum Pavir.Ea03527 I 0.880
Traes_3DL_D82CA7827 Triticum aestivum Traes_3DL_D82CA7827 I 0.880
SapurV1A.0152s0010 Salix purpurea SapurV1A.0152s0010 I 0.880
Traes_3AL_9D2735F60 Triticum aestivum Traes_3AL_9D2735F60 I 0.880
Traes_3B_D9F27151E Triticum aestivum Traes_3B_D9F27151E I 0.880
TRAES3BF094200030CFD_g Triticum aestivum TRAES3BF094200030CFD_g I 0.880
Si000815m.g Setaria italica Si000815m.g I 0.880
TRAES3BF107400040CFD_g Triticum aestivum TRAES3BF107400040CFD_g I 0.880
GRMZM2G100318 Zea mays GRMZM2G100318 I 0.880
OB01G49660 Oryza brachyantha OB01G49660 I 0.880
BGIOSGA000304 Oryza indica BGIOSGA000304 I 0.880
MLOC_23250 Hordeum vulgare MLOC_23250 I 0.880
GRMZM2G177220 Zea mays GRMZM2G177220 I 0.880
OBART01G40940 Oryza barthii OBART01G40940 I 0.880
F775_27736 Aegilops tauschii F775_27736 I 0.880
LPERR01G35510 Leersia perrieri LPERR01G35510 I 0.880
VIT_17s0000g10100 Vitis vinifera VIT_17s0000g10100 I 0.857
Ciclev10031052m.g Citrus clementina Ciclev10031052m.g I 0.857
orange1.1g007940m.g Citrus sinensis orange1.1g007940m.g I 0.857
BRADI2G58020 Brachypodium distachyon BRADI2G58020 I 0.855
Sb03g043080 Sorghum bicolor Sb03g043080 I 0.840
GSMUA_Achr8G32070_001 Musa acuminata GSMUA_Achr8G32070_001 I 0.840
MDP0000305167 Malus domestica MDP0000305167 I 0.838
MDP0000307383 Malus domestica MDP0000307383 I 0.838
mgf000016m Mimulus guttatus mgf000016m I 0.836
Ca_11309 Cicer arietinum Ca_11309 I 0.831
Solyc05g014260.2 Solanum lycopersicum Solyc05g014260.2 I 0.830
29929.m004752 Ricinus communis 29929.m004752 I 0.802
Lus10011389.g Linum usitatissimum Lus10011389.g I 0.802
Lus10006446.g Linum usitatissimum Lus10006446.g I 0.802
Eucgr.H04693 Eucalyptus grandis Eucgr.H04693 I 0.802
PDK_20s1379531g004 Phoenix dactylifera PDK_20s1379531g004 I 0.795
PGSC0003DMG400011980 Solanum tuberosum PGSC0003DMG400011980 I 0.791
GSMUA_Achr3G14630_001 Musa acuminata GSMUA_Achr3G14630_001 I 0.790
mgf004388m Mimulus guttatus mgf004388m I 0.783
Eucgr.H04694 Eucalyptus grandis Eucgr.H04694 I 0.781
Aquca_056_00105 Aquilegia coerulea Aquca_056_00105 I 0.771
Bostr.26959s0139 Boechera stricta Bostr.26959s0139 I 0.768
Cagra.2261s0012 Capsella grandiflora Cagra.2261s0012 I 0.768
Carubv10020133m.g Capsella rubella Carubv10020133m.g I 0.768
Bo6g105120 Brassica oleracea Bo6g105120 I 0.768
ARR11 Arabidopsis lyrata scaffold_201596.1 I 0.768
Thhalv10018396m.g Eutrema salsugineum Thhalv10018396m.g I 0.768
Bra004245 Brassica rapa Bra004245 I 0.768
Bo6g098710 Brassica oleracea Bo6g098710 I 0.768
Bra004076 Brassica rapa Bra004076 I 0.768
Thhalv10000098m.g Eutrema salsugineum Thhalv10000098m.g I 0.759
orange1.1g027234m.g Citrus sinensis orange1.1g027234m.g I 0.755
ARR11 Arabidopsis thaliana AT1G67710 D 0.749
Bo4g157430 Brassica oleracea Bo4g157430 I 0.743
Bra032035 Brassica rapa Bra032035 I 0.743
Aquca_011_00344 Aquilegia coerulea Aquca_011_00344 I 0.742
cassava32312.m1 Manihot esculenta cassava32312.m1 I 0.738
Lus10019058.g Linum usitatissimum Lus10019058.g I 0.710
mgf013006m Mimulus guttatus mgf013006m I 0.696
Lus10036303.g Linum usitatissimum Lus10036303.g I 0.695
chr6.CM0037.920.nc Lotus japonicus chr6.CM0037.920.nc I 0.695
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I 0.688
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I 0.688
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I 0.688
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I 0.688
chr5.CM0345.260.nd Lotus japonicus chr5.CM0345.260.nd I 0.687
PDK_20s1782651g001 Phoenix dactylifera PDK_20s1782651g001 I 0.677
orange1.1g005465m.g Citrus sinensis orange1.1g005465m.g I 0.677
SapurV1A.0730s0060 Salix purpurea SapurV1A.0730s0060 I 0.677
PDK_20s1362511g001 Phoenix dactylifera PDK_20s1362511g001 I 0.677
Ciclev10007639m.g Citrus clementina Ciclev10007639m.g I 0.677
PDK_20s1342911g003 Phoenix dactylifera PDK_20s1342911g003 I 0.677
Aquca_016_00168 Aquilegia coerulea Aquca_016_00168 I 0.677
cassava18405.valid.m1 Manihot esculenta cassava18405.valid.m1 I 0.677
GLYMA09G14650 Glycine max GLYMA09G14650 I 0.677
GLYMA06G06730 Glycine max GLYMA06G06730 I 0.677
Cla021325 Citrullus lanatus Cla021325 I 0.677
VIT_04s0008g05900 Vitis vinifera VIT_04s0008g05900 I 0.677
TCM_037098 Theobroma cacao TCM_037098 I 0.677
GLYMA15G24770 Glycine max GLYMA15G24770 I 0.677
29737.m001227 Ricinus communis 29737.m001227 I 0.677
GLYMA14G13320 Glycine max GLYMA14G13320 I 0.677
cassava8114.valid.m1 Manihot esculenta cassava8114.valid.m1 I 0.677
29848.m004559 Ricinus communis 29848.m004559 I 0.677
Cucsa.271670 Cucumis sativus Cucsa.271670 I 0.677
cassava18404.valid.m1 Manihot esculenta cassava18404.valid.m1 I 0.677
GLYMA04G06650 Glycine max GLYMA04G06650 I 0.677
cassava262.valid.m1 Manihot esculenta cassava262.valid.m1 I 0.677
MTR_1g013180 Medicago truncatula MTR_1g013180 I 0.671
MTR_3g106220 Medicago truncatula MTR_3g106220 I 0.670
RR22 Oryza indica BGIOSGA022430 I 0.668
RR23 Oryza sativa OS02G0796500 I 0.668
LPERR06G04900 Leersia perrieri LPERR06G04900 I 0.668
Pavir.J35630 Panicum virgatum Pavir.J35630 I 0.668
RR22 Oryza sativa OS06G0183100 I 0.668
ORUFI06G05490 Oryza rufipogon ORUFI06G05490 I 0.668
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.668
RR23 Oryza indica BGIOSGA005436 I 0.668
OB02G42700 Oryza brachyantha OB02G42700 I 0.668
OB06G14930 Oryza brachyantha OB06G14930 I 0.668
OGLUM06G05540 Oryza glumaepatula OGLUM06G05540 I 0.668
OMERI06G06380 Oryza meridionalis OMERI06G06380 I 0.668
Pavir.J08270 Panicum virgatum Pavir.J08270 I 0.668
ORGLA02G0311700 Oryza glaberrima ORGLA02G0311700 I 0.668
OPUNC06G05150 Oryza punctata OPUNC06G05150 I 0.668
ONIVA06G06160 Oryza nivara ONIVA06G06160 I 0.668
ORGLA06G0048800 Oryza glaberrima ORGLA06G0048800 I 0.668
GRMZM2G479110 Zea mays GRMZM2G479110 I 0.668
Sb04g035980 Sorghum bicolor Sb04g035980 I 0.668
Traes_7AS_DECB8080D Triticum aestivum Traes_7AS_DECB8080D I 0.668
TRIUR3_26858 Triticum urartu TRIUR3_26858 I 0.668
TRIUR3_28229 Triticum urartu TRIUR3_28229 I 0.668
OBART06G05360 Oryza barthii OBART06G05360 I 0.668
F775_19079 Aegilops tauschii F775_19079 I 0.668
Traes_7DS_22DE624A5 Triticum aestivum Traes_7DS_22DE624A5 I 0.668
Pavir.Da02067 Panicum virgatum Pavir.Da02067 I 0.668
TCM_036926 Theobroma cacao TCM_036926 I 0.668
Sb10g005580 Sorghum bicolor Sb10g005580 I 0.668
Si006013m.g Setaria italica Si006013m.g I 0.668
Si016546m.g Setaria italica Si016546m.g I 0.668
Eucgr.C00380 Eucalyptus grandis Eucgr.C00380 I 0.661
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.661
Gorai.004G291100 Gossypium raimondii Gorai.004G291100 I 0.661
Gorai.009G054200 Gossypium raimondii Gorai.009G054200 I 0.661
Gorai.010G243900 Gossypium raimondii Gorai.010G243900 I 0.661
evm.TU.supercontig_46.117 Carica papaya evm.TU.supercontig_46.117 I 0.661