Carubv10020133m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10020133m.g T286394_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR11
M00872_2.00 		Arabidopsis thaliana
NRATHHNNN
NNNDDATYN		 PBM
Franco-Zorrilla et al.(2014)
ARR11 		0.891 0.979
PK07924.1
M01278_2.00 		Cannabis sativa
NGATHYNNN
NNNRDATCN		 PBM
Lambert et al.(2019)
pTH11431 		0.786 0.915
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020133m Myb 195 246

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g105120 Brassica oleracea Bo6g105120 I 0.909
Bra004245 Brassica rapa Bra004245 I 0.909
ARR11 Arabidopsis lyrata scaffold_201596.1 I 0.909
Bostr.26959s0139 Boechera stricta Bostr.26959s0139 I 0.909
Cagra.2261s0012 Capsella grandiflora Cagra.2261s0012 I 0.909
Thhalv10018396m.g Eutrema salsugineum Thhalv10018396m.g I 0.909
ARR11 Arabidopsis thaliana AT1G67710 D 0.891
Bo6g098710 Brassica oleracea Bo6g098710 I 0.875
Bra004076 Brassica rapa Bra004076 I 0.875
GLYMA05G27670 Glycine max GLYMA05G27670 I 0.786
GLYMA08G10650 Glycine max GLYMA08G10650 I 0.786
GLYMA11G37480 Glycine max GLYMA11G37480 I 0.786
GLYMA18G01434 Glycine max GLYMA18G01434 I 0.786
MTR_8g079940 Medicago truncatula MTR_8g079940 I 0.786
PRUPE_ppa002679mg Prunus persica PRUPE_ppa002679mg I 0.786
TCM_010701 Theobroma cacao TCM_010701 I 0.786
ARR11 Vitis vinifera VIT_01s0010g02230 I 0.786
VIT_17s0000g10100 Vitis vinifera VIT_17s0000g10100 I 0.786
Cla023064 Citrullus lanatus Cla023064 I 0.786
Pm006838 Prunus mume Pm006838 I 0.786
29929.m004752 Ricinus communis 29929.m004752 I 0.786
cassava13981.valid.m1 Manihot esculenta cassava13981.valid.m1 I 0.786
cassava29171.valid.m1 Manihot esculenta cassava29171.valid.m1 I 0.786
Cucsa.394720 Cucumis sativus Cucsa.394720 I 0.786
Ciclev10031052m.g Citrus clementina Ciclev10031052m.g I 0.786
Eucgr.H04693 Eucalyptus grandis Eucgr.H04693 I 0.786
evm.TU.supercontig_86.17 Carica papaya evm.TU.supercontig_86.17 I 0.786
Gorai.005G173300 Gossypium raimondii Gorai.005G173300 I 0.786
Lus10006446.g Linum usitatissimum Lus10006446.g I 0.786
Lus10011389.g Linum usitatissimum Lus10011389.g I 0.786
MDP0000320381 Malus domestica MDP0000320381 I 0.786
orange1.1g007940m.g Citrus sinensis orange1.1g007940m.g I 0.786
PK07924.1 Cannabis sativa PK07924.1 D 0.786
LjSGA_022114.1 Lotus japonicus LjSGA_022114.1 I 0.786
MTR_3g086100 Medicago truncatula MTR_3g086100 I 0.783
BGIOSGA000304 Oryza indica BGIOSGA000304 I 0.774
F775_27736 Aegilops tauschii F775_27736 I 0.774
GRMZM2G100318 Zea mays GRMZM2G100318 I 0.774
GRMZM2G177220 Zea mays GRMZM2G177220 I 0.774
GSMUA_Achr3G14630_001 Musa acuminata GSMUA_Achr3G14630_001 I 0.774
LPERR01G35510 Leersia perrieri LPERR01G35510 I 0.774
MLOC_23250 Hordeum vulgare MLOC_23250 I 0.774
OB01G49660 Oryza brachyantha OB01G49660 I 0.774
OBART01G40940 Oryza barthii OBART01G40940 I 0.774
OGLUM01G45120 Oryza glumaepatula OGLUM01G45120 I 0.774
OLONG_004141 Oryza longistaminata OLONG_004141 I 0.774
OMERI01G37950 Oryza meridionalis OMERI01G37950 I 0.774
ONIVA01G45980 Oryza nivara ONIVA01G45980 I 0.774
OPUNC01G39740 Oryza punctata OPUNC01G39740 I 0.774
ORGLA01G0348700 Oryza glaberrima ORGLA01G0348700 I 0.774
ORUFI01G44260 Oryza rufipogon ORUFI01G44260 I 0.774
RR26 Oryza sativa OS01G0904700 I 0.774
POPTR_0010s06290 Populus trichocarpa POPTR_0010s06290 I 0.774
Si000815m.g Setaria italica Si000815m.g I 0.774
Traes_3AL_9D2735F60 Triticum aestivum Traes_3AL_9D2735F60 I 0.774
Traes_3B_D9F27151E Triticum aestivum Traes_3B_D9F27151E I 0.774
TRAES3BF094200030CFD_g Triticum aestivum TRAES3BF094200030CFD_g I 0.774
TRAES3BF107400040CFD_g Triticum aestivum TRAES3BF107400040CFD_g I 0.774
Traes_3DL_D82CA7827 Triticum aestivum Traes_3DL_D82CA7827 I 0.774
Pavir.Ea03527 Panicum virgatum Pavir.Ea03527 I 0.774
Pavir.J23046 Panicum virgatum Pavir.J23046 I 0.774
SapurV1A.0152s0010 Salix purpurea SapurV1A.0152s0010 I 0.774
SapurV1A.0629s0180 Salix purpurea SapurV1A.0629s0180 I 0.774
POPTR_0008s18130 Populus trichocarpa POPTR_0008s18130 I 0.768
SapurV1A.0206s0280 Salix purpurea SapurV1A.0206s0280 I 0.768
Eucgr.H04694 Eucalyptus grandis Eucgr.H04694 I 0.765
Aquca_056_00105 Aquilegia coerulea Aquca_056_00105 I 0.755
BRADI2G58020 Brachypodium distachyon BRADI2G58020 I 0.750
GSMUA_Achr8G32070_001 Musa acuminata GSMUA_Achr8G32070_001 I 0.735
Sb03g043080 Sorghum bicolor Sb03g043080 I 0.735
MDP0000305167 Malus domestica MDP0000305167 I 0.732
MDP0000307383 Malus domestica MDP0000307383 I 0.732
mgf000016m Mimulus guttatus mgf000016m I 0.731
Ca_11309 Cicer arietinum Ca_11309 I 0.726
Aquca_011_00344 Aquilegia coerulea Aquca_011_00344 I 0.726
Solyc05g014260.2 Solanum lycopersicum Solyc05g014260.2 I 0.724
PDK_20s1379531g004 Phoenix dactylifera PDK_20s1379531g004 I 0.690
PGSC0003DMG400011980 Solanum tuberosum PGSC0003DMG400011980 I 0.686
mgf004388m Mimulus guttatus mgf004388m I 0.678
Bostr.26833s0442 Boechera stricta Bostr.26833s0442 I 0.678
Cagra.0891s0003 Capsella grandiflora Cagra.0891s0003 I 0.678
Carubv10026052m.g Capsella rubella Carubv10026052m.g I 0.678
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I 0.671
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I 0.671
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I 0.671
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I 0.671
mgf013006m Mimulus guttatus mgf013006m I 0.662