Bo4g195320 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo4g195320 T191893_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.848 0.944
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.848 0.944
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.847 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.843 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.838 0.889
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.838 0.889
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.838 0.889
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.833 0.861
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.833
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.833
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.830 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.830 0.778
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.819 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.819 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.819 0.806
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.819 0.778
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.819 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g195320.1 GATA 171 206

Links

Other GATA family TFs
Other Brassica oleracea TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAB39329 Xenopus laevis AAB39329 I
Aan_R002236 Calypte anna Aan_R002236 I
Aan_R005610 Calypte anna Aan_R005610 I
ACEP23524 Atta cephalotes ACEP23524 I
Afo_R015053 Aptenodytes forsteri Afo_R015053 I
Brh_R001114 Buceros rhinoceros Brh_R001114 I
Brh_R001115 Buceros rhinoceros Brh_R001115 I
CapteG167863 Capitella teleta CapteG167863 I
CGI_10014747 Crassostrea gigas CGI_10014747 I
CGI_10017370 Crassostrea gigas CGI_10017370 I
DAPPUDRAFT_314805 Daphnia pulex DAPPUDRAFT_314805 I
ENSAMEG00000003318 Ailuropoda melanoleuca ENSAMEG00000003318 I
ENSAMXG00000002880 Astyanax mexicanus ENSAMXG00000002880 I
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I
ENSAPLG00000007006 Anas platyrhynchos ENSAPLG00000007006 I
ENSAPLG00000011496 Anas platyrhynchos ENSAPLG00000011496 I
ENSBTAP00000003668-D4 Bos grunniens ENSBTAP00000003668-D4 I
SMAD3 Canis familiaris ENSCAFG00000017388 I
SMAD3 Choloepus hoffmanni ENSCHOG00000001562 I
ENSCING00000006188 Ciona intestinalis ENSCING00000006188 I
SMAD3 Callithrix jacchus ENSCJAG00000002088 I
SMAD3 Cavia porcellus ENSCPOG00000021314 I
ENSCSAG00000013275 Chlorocebus sabaeus ENSCSAG00000013275 I
ENSCSAVG00000004749 Ciona savignyi ENSCSAVG00000004749 I
smad3b Danio rerio ENSDARG00000010207 I
smad3a Danio rerio ENSDARG00000036096 I
SMAD3 Dasypus novemcinctus ENSDNOG00000044090 I
SMAD9 Dasypus novemcinctus ENSDNOG00000048385 I
SMAD3 Echinops telfairi ENSETEG00000003356 I
ENSFALG00000012861 Ficedula albicollis ENSFALG00000012861 I
SMAD3 Homo sapiens ENSG00000166949 D
smad3b Gasterosteus aculeatus ENSGACG00000005092 I
ENSGACG00000017820 Gasterosteus aculeatus ENSGACG00000017820 I
ENSGALG00000007870 Gallus gallus ENSGALG00000007870 I
ENSGALG00000014184 Gallus gallus ENSGALG00000014184 I
ENSGMOG00000001314 Gadus morhua ENSGMOG00000001314 I
ENSGMOG00000008364 Gadus morhua ENSGMOG00000008364 I
ENSLOCG00000013897 Lepisosteus oculatus ENSLOCG00000013897 I
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I
SMAD3 Microcebus murinus ENSMICG00000006119 I
SMAD3 Macaca mulatta ENSMMUG00000015455 I
SMAD3 Monodelphis domestica ENSMODG00000009609 I
Smad3 Mus musculus ENSMUSG00000032402 D
ENSNLEG00000012983 Nomascus leucogenys ENSNLEG00000012983 I
SMAD3 Otolemur garnettii ENSOGAG00000014217 I
ENSONIG00000004109 Oreochromis niloticus ENSONIG00000004109 I
ENSONIG00000013271 Oreochromis niloticus ENSONIG00000013271 I
ENSONIG00000015464 Oreochromis niloticus ENSONIG00000015464 I
SMAD3 Ochotona princeps ENSOPRG00000014996 I
smad3a Oryzias latipes ENSORLG00000002207 I
smad3b Oryzias latipes ENSORLG00000006803 I
ENSORLG00000011834 Oryzias latipes ENSORLG00000011834 I
ENSP00000332973 Macaca fascicularis ENSP00000332973 I
ENSP00000332973-D1 Bos grunniens ENSP00000332973-D1 I
ENSPANG00000016627 Papio anubis ENSPANG00000016627 I
SMAD3 Procavia capensis ENSPCAG00000008103 I
ENSPFOG00000002285 Poecilia formosa ENSPFOG00000002285 I
ENSPFOG00000004885 Poecilia formosa ENSPFOG00000004885 I
ENSPFOG00000006336 Poecilia formosa ENSPFOG00000006336 I
ENSPFOG00000008802 Poecilia formosa ENSPFOG00000008802 I
ENSPMAG00000000489 Petromyzon marinus ENSPMAG00000000489 I
ENSPPYG00000006583 Pongo abelii ENSPPYG00000006583 I
ENSPSIG00000010579 Pelodiscus sinensis ENSPSIG00000010579 I
SMAD3 Pan troglodytes ENSPTRG00000007199 I
SMAD3 Pteropus vampyrus ENSPVAG00000002626 I
Smad3 Rattus norvegicus ENSRNOG00000008620 I
SMAD2 Sorex araneus ENSSARG00000003487 I
ENSSHAG00000012543 Sarcophilus harrisii ENSSHAG00000012543 I
ENSSTOG00000003788 Ictidomys tridecemlineatus ENSSTOG00000003788 I
ENSSTOG00000010286 Ictidomys tridecemlineatus ENSSTOG00000010286 I
ENSTBEG00000003884 Tupaia belangeri ENSTBEG00000003884 I
SMAD3 Taeniopygia guttata ENSTGUG00000009470 I
ENSTNIG00000004827 Tetraodon nigroviridis ENSTNIG00000004827 I
smad3b Tetraodon nigroviridis ENSTNIG00000008432 I
smad3a Tetraodon nigroviridis ENSTNIG00000009546 I
smad3b Takifugu rubripes ENSTRUG00000014802 I
smad3a Takifugu rubripes ENSTRUG00000016858 I
ENSXMAG00000002377 Xiphophorus maculatus ENSXMAG00000002377 I
ENSXMAG00000003553 Xiphophorus maculatus ENSXMAG00000003553 I
ENSXMAG00000004505 Xiphophorus maculatus ENSXMAG00000004505 I
estExt_fgenesh2_pg.C_1720042 Branchiostoma floridae estExt_fgenesh2_pg.C_1720042 I
estExt_gwp.C_540260 Branchiostoma floridae estExt_gwp.C_540260 I
Gfo_R005908 Geospiza fortis Gfo_R005908 I
Gfo_R012055 Geospiza fortis Gfo_R012055 I
HelroG185435 Helobdella robusta HelroG185435 I
ISCW001846 Ixodes scapularis ISCW001846 I
L798_14024 Zootermopsis nevadensis L798_14024 I
ML011743a Mnemiopsis leidyi ML011743a I
Myotis_brandtii_Smad3_10022298 Myotis brandtii Myotis_brandtii_Smad3_10022298 I
NEMVEDRAFT_v1g168041 Nematostella vectensis NEMVEDRAFT_v1g168041 I
NV10880 Nasonia vitripennis NV10880 I
Sakowv30001252m.g Saccoglossus kowalevskii Sakowv30001252m.g I
SMAR008230 Strigamia maritima SMAR008230 I
SPU_017642 Strongylocentrotus purpuratus SPU_017642 I
SPU_020722 Strongylocentrotus purpuratus SPU_020722 I
SPU_023107 Strongylocentrotus purpuratus SPU_023107 I
Tal_R001210 Tyto alba Tal_R001210 I
Tal_R011237 Tyto alba Tal_R011237 I
TMUE_s0005013500 Trichuris muris TMUE_s0005013500 I
TriadG49742 Trichoplax adhaerens TriadG49742 I
TriadG50301 Trichoplax adhaerens TriadG50301 I
smad3 Xenopus tropicalis XB-GENE-481992 I
smad3.L Xenopus laevis XB-GENE-864816 I
smad2.S Xenopus laevis XB-GENE-864923 I
XP_002157279.1 Hydra magnipapillata XP_002157279.1 I
XP_002160208.1 Hydra magnipapillata XP_002160208.1 I