Gfo_R005908 (Geospiza fortis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Gfo_R005908 T325310_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Smad3
M00192_2.00 		Mus musculus
NNNNNMGMCN
NGKCKNNNNN		 PBM
Badis et al.(2009)
Smad3_3805 		0.980 0.980
SMAD3
M03482_2.00 		Homo sapiens
YGTCTAGACA
TGTCTAGACR		 SELEX
Jolma et al.(2013)
SMAD3_1 		0.980 0.980
SMAD3
M09380_2.00 		Homo sapiens
NBCTSHCWSCWB
VWGSWGDSAGVN		 Misc
Kulakovskiy et al.(2013)
SMAD3_HUMAN.H11MO.0.B 		0.980 0.980
Smad3
M09384_2.00 		Mus musculus
NBCTSHCWSCWB
VWGSWGDSAGVN		 Misc
Kulakovskiy et al.(2013)
SMAD3_MOUSE.H11MO.0.B 		0.980 0.980
Smad3
M09637_2.00 		Mus musculus
BYAGMCWN
NWGKCTRV		 Misc
Heinz et al.(2010)
NPC-Smad3_GSE36673 		0.980 0.980
SMAD3
M11283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6_01 		0.980 0.980
SMAD3
M11284_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6_02 		0.980 0.980
SMAD3
M11285_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6 		0.980 0.980
SMAD9
M11274_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_01 		0.723 0.723
Smad9
M11290_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_02 		0.723 0.723
Smad9
M11289_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_03 		0.723 0.723
SMAD1
M11286_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_01 		0.703 0.703
SMAD1
M11287_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_Q6 		0.703 0.703
Smad5
M11288_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_01 		0.703 0.703
Smad5
M11292_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_03 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R005908 SMAD 32 132

Links

Other SMAD family TFs
Other Geospiza fortis TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Brh_R001114 Buceros rhinoceros Brh_R001114 I 1.000
ENSFALG00000012861 Ficedula albicollis ENSFALG00000012861 I 1.000
Gfo_R000026 Geospiza fortis Gfo_R000026 I 1.000
ENSGMOG00000001314 Gadus morhua ENSGMOG00000001314 I 1.000
ENSOARG00000018276 Ovis aries ENSOARG00000018276 I 1.000
SMAD3 Monodelphis domestica ENSMODG00000009609 I 1.000
ENSGALG00000007870 Gallus gallus ENSGALG00000007870 I 0.990
Afo_R015053 Aptenodytes forsteri Afo_R015053 I 0.990
Aan_R005610 Calypte anna Aan_R005610 I 0.990
ENSPSIG00000010579 Pelodiscus sinensis ENSPSIG00000010579 I 0.984
Tal_R001210 Tyto alba Tal_R001210 I 0.984
ENSAPLG00000007006 Anas platyrhynchos ENSAPLG00000007006 I 0.984
Brh_R001115 Buceros rhinoceros Brh_R001115 I 0.984
ENSP00000332973-D1 Bos grunniens ENSP00000332973-D1 I 0.980
SMAD3 Ochotona princeps ENSOPRG00000014996 I 0.980
ENSCSAG00000013275 Chlorocebus sabaeus ENSCSAG00000013275 I 0.980
SMAD3 Dasypus novemcinctus ENSDNOG00000044090 I 0.980
Myotis_brandtii_Smad3_10022298 Myotis brandtii Myotis_brandtii_Smad3_10022298 I 0.980
SMAD3 Otolemur garnettii ENSOGAG00000014217 I 0.980
SMAD3 Homo sapiens ENSG00000166949 D 0.980
Smad3 Rattus norvegicus ENSRNOG00000008620 I 0.980
SMAD3 Microcebus murinus ENSMICG00000006119 I 0.980
SMAD3 Macaca mulatta ENSMMUG00000015455 I 0.980
Smad3 Mus musculus ENSMUSG00000032402 D 0.980
ENSNLEG00000012983 Nomascus leucogenys ENSNLEG00000012983 I 0.980
ENSPANG00000016627 Papio anubis ENSPANG00000016627 I 0.980
SMAD3 Pteropus vampyrus ENSPVAG00000002626 I 0.980
ENSAMEG00000003318 Ailuropoda melanoleuca ENSAMEG00000003318 I 0.980
SMAD3 Callithrix jacchus ENSCJAG00000002088 I 0.980
SMAD3 Canis familiaris ENSCAFG00000017388 I 0.980
ENSPPYG00000006583 Pongo abelii ENSPPYG00000006583 I 0.980
ENSSTOG00000010286 Ictidomys tridecemlineatus ENSSTOG00000010286 I 0.980
SMAD3 Pan troglodytes ENSPTRG00000007199 I 0.980
ENSTBEG00000003884 Tupaia belangeri ENSTBEG00000003884 I 0.979
SMAD3 Meleagris gallopavo ENSMGAG00000009879 I 0.974
SMAD3 Cavia porcellus ENSCPOG00000021314 I 0.970
SMAD3 Choloepus hoffmanni ENSCHOG00000001562 I 0.969
SMAD3 Echinops telfairi ENSETEG00000003356 I 0.960
SMAD3 Procavia capensis ENSPCAG00000008103 I 0.960
ENSLACG00000010552 Latimeria chalumnae ENSLACG00000010552 I 0.952
ENSLOCG00000013897 Lepisosteus oculatus ENSLOCG00000013897 I 0.951
ENSOARG00000018267 Ovis aries ENSOARG00000018267 I 0.949
Tal_R011237 Tyto alba Tal_R011237 I 0.947
ENSAPLG00000011496 Anas platyrhynchos ENSAPLG00000011496 I 0.947
Tal_R000062 Tyto alba Tal_R000062 I 0.943
smad3 Xenopus tropicalis XB-GENE-481992 I 0.941
ENSAMXG00000002880 Astyanax mexicanus ENSAMXG00000002880 I 0.941
smad3a Takifugu rubripes ENSTRUG00000016858 I 0.941
smad3a Danio rerio ENSDARG00000036096 I 0.941
smad3b Danio rerio ENSDARG00000010207 I 0.941
smad3a Tetraodon nigroviridis ENSTNIG00000009546 I 0.941
ENSPFOG00000006336 Poecilia formosa ENSPFOG00000006336 I 0.941
ENSP00000332973 Macaca fascicularis ENSP00000332973 I 0.940
ENSONIG00000013271 Oreochromis niloticus ENSONIG00000013271 I 0.931
Aan_R002236 Calypte anna Aan_R002236 I 0.931
ENSXMAG00000002377 Xiphophorus maculatus ENSXMAG00000002377 I 0.931
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I 0.931
ENSGALG00000014184 Gallus gallus ENSGALG00000014184 I 0.931
smad3.L Xenopus laevis XB-GENE-864816 I 0.931
AAB39329 Xenopus laevis AAB39329 I 0.931
SMAD3 Taeniopygia guttata ENSTGUG00000009470 I 0.926
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I 0.921
ENSORLG00000011834 Oryzias latipes ENSORLG00000011834 I 0.921
Gfo_R012055 Geospiza fortis Gfo_R012055 I 0.921
smad3a Oryzias latipes ENSORLG00000002207 I 0.921
ENSBTAP00000003668-D4 Bos grunniens ENSBTAP00000003668-D4 I 0.921
smad3b Gasterosteus aculeatus ENSGACG00000005092 I 0.921
ENSSTOG00000003788 Ictidomys tridecemlineatus ENSSTOG00000003788 I 0.921
ENSGACG00000017820 Gasterosteus aculeatus ENSGACG00000017820 I 0.921
smad2.S Xenopus laevis XB-GENE-864923 I 0.921
SMAD2 Sorex araneus ENSSARG00000003487 I 0.921
ENSGMOG00000008364 Gadus morhua ENSGMOG00000008364 I 0.911
ENSONIG00000015464 Oreochromis niloticus ENSONIG00000015464 I 0.911
smad3b Oryzias latipes ENSORLG00000006803 I 0.911
smad3b Tetraodon nigroviridis ENSTNIG00000008432 I 0.911
ENSONIG00000004109 Oreochromis niloticus ENSONIG00000004109 I 0.911
smad3b Takifugu rubripes ENSTRUG00000014802 I 0.901
ENSXMAG00000003553 Xiphophorus maculatus ENSXMAG00000003553 I 0.901
ENSPFOG00000008802 Poecilia formosa ENSPFOG00000008802 I 0.901
ENSPFOG00000004885 Poecilia formosa ENSPFOG00000004885 I 0.901
SMAR008230 Strigamia maritima SMAR008230 I 0.901
ENSPFOG00000002285 Poecilia formosa ENSPFOG00000002285 I 0.901
ENSTNIG00000004827 Tetraodon nigroviridis ENSTNIG00000004827 I 0.891
ENSXMAG00000004505 Xiphophorus maculatus ENSXMAG00000004505 I 0.891
ENSSHAG00000012543 Sarcophilus harrisii ENSSHAG00000012543 I 0.890
ENSPMAG00000004234 Petromyzon marinus ENSPMAG00000004234 I 0.889
Pvit_04529 Pogona vitticeps Pvit_04529 I 0.877
Sakowv30032201m.g Saccoglossus kowalevskii Sakowv30032201m.g I 0.875
ENSPMAG00000000489 Petromyzon marinus ENSPMAG00000000489 I 0.871
L798_14024 Zootermopsis nevadensis L798_14024 I 0.871
Cmyd_10013581 Chelonia mydas Cmyd_10013581 I 0.863
CpipJ_CPIJ018354 Culex pipiens CpipJ_CPIJ018354 I 0.846
ACEP23524 Atta cephalotes ACEP23524 I 0.842
SPU_017642 Strongylocentrotus purpuratus SPU_017642 I 0.842
SMAD2 Microcebus murinus ENSMICG00000007882 I 0.837
estExt_gwp.C_540260 Branchiostoma floridae estExt_gwp.C_540260 I 0.832
NEMVEDRAFT_v1g168041 Nematostella vectensis NEMVEDRAFT_v1g168041 I 0.832
estExt_fgenesh2_pg.C_1720042 Branchiostoma floridae estExt_fgenesh2_pg.C_1720042 I 0.832
ISCW001846 Ixodes scapularis ISCW001846 I 0.832
ML011743a Mnemiopsis leidyi ML011743a I 0.830
ENSETEG00000017446 Echinops telfairi ENSETEG00000017446 I 0.828
Alligator_sinensis_CCG004626.1 Alligator sinensis Alligator_sinensis_CCG004626.1 I 0.827
CGI_10017370 Crassostrea gigas CGI_10017370 I 0.822
DAPPUDRAFT_314805 Daphnia pulex DAPPUDRAFT_314805 I 0.822
CapteG167863 Capitella teleta CapteG167863 I 0.822
LotgiG189014 Lottia gigantea LotgiG189014 I 0.802
PPAI005080 Phlebotomus papatasi PPAI005080 I 0.795
XP_002157279.1 Hydra magnipapillata XP_002157279.1 I 0.775
PHUM033930 Pediculus humanus PHUM033930 I 0.760
TriadG49742 Trichoplax adhaerens TriadG49742 I 0.752
NV10880 Nasonia vitripennis NV10880 I 0.752
ENSCSAVG00000004749 Ciona savignyi ENSCSAVG00000004749 I 0.752
SMAD3 Gasterosteus aculeatus ENSGACG00000016882 I 0.750
D918_09504 Trichuris suis D918_09504 I 0.743
TMUE_s0005013500 Trichuris muris TMUE_s0005013500 I 0.743
TTRE_0000192701 Trichuris trichiura TTRE_0000192701 I 0.743
HelroG185435 Helobdella robusta HelroG185435 I 0.743
ENSPMAG00000009833 Petromyzon marinus ENSPMAG00000009833 I 0.743
ENSCING00000006188 Ciona intestinalis ENSCING00000006188 I 0.733
EFV60166 Trichinella spiralis EFV60166 I 0.733
D917_04509 Trichinella nativa D917_04509 I 0.733
ENSPPYG00000005285 Pongo abelii ENSPPYG00000005285 I 0.725
SMAD9 Myotis lucifugus ENSMLUG00000006399 I 0.723
SMAD9 Procavia capensis ENSPCAG00000002604 I 0.723
Myotis_brandtii_SMAD9_10010468 Myotis brandtii Myotis_brandtii_SMAD9_10010468 I 0.723
Smad5 Dipodomys ordii ENSDORG00000004533 I 0.721
ADIR005117 Anopheles dirus ADIR005117 I 0.718
XP_002160208.1 Hydra magnipapillata XP_002160208.1 I 0.718
SMAD9 Microcebus murinus ENSMICG00000003343 I 0.716
TriadG50301 Trichoplax adhaerens TriadG50301 I 0.716
SMAD9 Loxodonta africana ENSLAFG00000002903 I 0.716
Smad9 Rattus norvegicus ENSRNOG00000000091 D 0.716
SMAD9 Dasypus novemcinctus ENSDNOG00000048385 I 0.716
SMAD9 Equus caballus ENSECAG00000012534 I 0.716
Smad9 Mus musculus ENSMUSG00000027796 D 0.716
ENSMPUG00000001838 Mustela putorius furo ENSMPUG00000001838 I 0.716
ENSAMEG00000014442 Ailuropoda melanoleuca ENSAMEG00000014442 I 0.716
SMAD9 Macaca mulatta ENSMMUG00000009914 I 0.716
SMAD9 Gorilla gorilla ENSGGOG00000001017 I 0.716
SMAD9 Bos taurus ENSBTAG00000007589 I 0.716
SMAD9 Homo sapiens ENSG00000120693 D 0.716
SMAD9 Felis catus ENSFCAG00000003813 I 0.716
SMAD9 Cavia porcellus ENSCPOG00000010255 I 0.716
ENSBTAP00000029021-D3 Bos grunniens ENSBTAP00000029021-D3 I 0.716
ENSNLEG00000001639 Nomascus leucogenys ENSNLEG00000001639 I 0.716
Smad9 Dipodomys ordii ENSDORG00000002526 I 0.716
SMAD9 Canis familiaris ENSCAFG00000006162 I 0.716
ENSP00000382216 Macaca fascicularis ENSP00000382216 I 0.716
SMAD9 Echinops telfairi ENSETEG00000020236 I 0.716
ENSCSAG00000017872 Chlorocebus sabaeus ENSCSAG00000017872 I 0.716
LotgiG104873 Lottia gigantea LotgiG104873 I 0.716
ENSSTOG00000007103 Ictidomys tridecemlineatus ENSSTOG00000007103 I 0.716
SMAD9 Tupaia belangeri ENSTBEG00000011491 I 0.716
ENSPANG00000014460 Papio anubis ENSPANG00000014460 I 0.716
SMAD9 Ochotona princeps ENSOPRG00000004923 I 0.716
SMAD9 Sus scrofa ENSSSCG00000009357 I 0.716
SMAD9 Pan troglodytes ENSPTRG00000005788 I 0.716
LOC103691556 Rattus norvegicus ENSRNOG00000058416 I 0.716
SMAD9 Pteropus vampyrus ENSPVAG00000013871 I 0.716
SMAD9 Sorex araneus ENSSARG00000011878 I 0.716
SMAD9 Tursiops truncatus ENSTTRG00000007903 I 0.716
ENSTSYG00000005021 Tarsius syrichta ENSTSYG00000005021 I 0.716
SMAD9 Oryctolagus cuniculus ENSOCUG00000007453 I 0.716
SMAD9 Otolemur garnettii ENSOGAG00000002742 I 0.716
HelroG186716 Helobdella robusta HelroG186716 I 0.713
ENSLACG00000011178 Latimeria chalumnae ENSLACG00000011178 I 0.713
SMAD5 Ornithorhynchus anatinus ENSOANG00000009906 I 0.713
CGI_10014747 Crassostrea gigas CGI_10014747 I 0.713
SMAD1 Ochotona princeps ENSOPRG00000012775 I 0.711
SINV22799 Solenopsis invicta SINV22799 I 0.710
ACEP23519 Atta cephalotes ACEP23519 I 0.710
Aqu1.222022 Amphimedon queenslandica Aqu1.222022 I 0.707
AAL86774 Xenopus laevis AAL86774 I 0.706
smad9 Xenopus tropicalis XB-GENE-484686 I 0.706
SMAD9 Anolis carolinensis ENSACAG00000004463 I 0.706
Tal_R004657 Tyto alba Tal_R004657 I 0.706
ENSAPLG00000009135 Anas platyrhynchos ENSAPLG00000009135 I 0.706
AAK02019 Xenopus laevis AAK02019 I 0.706
smad9.S Xenopus laevis XB-GENE-865114 I 0.706
smad9 Danio rerio ENSDARG00000021938 I 0.706
AAL86773 Xenopus laevis AAL86773 I 0.706
ENSAMXG00000016178 Astyanax mexicanus ENSAMXG00000016178 I 0.706
BGLB001215 Biomphalaria glabrata BGLB001215 I 0.706
DAPPUDRAFT_300607 Daphnia pulex DAPPUDRAFT_300607 I 0.706
BGLB010651 Biomphalaria glabrata BGLB010651 I 0.706
Afo_R003117 Aptenodytes forsteri Afo_R003117 I 0.706
Pvit_04328 Pogona vitticeps Pvit_04328 I 0.706
SMAD9 Monodelphis domestica ENSMODG00000010017 I 0.706
NEMVEDRAFT_v1g228395 Nematostella vectensis NEMVEDRAFT_v1g228395 I 0.706
ENSONIG00000012614 Oreochromis niloticus ENSONIG00000012614 I 0.706
smad9 Takifugu rubripes ENSTRUG00000001196 I 0.706
ENSSHAG00000001186 Sarcophilus harrisii ENSSHAG00000001186 I 0.706
ENSPSIG00000002483 Pelodiscus sinensis ENSPSIG00000002483 I 0.706
smad9 Tetraodon nigroviridis ENSTNIG00000009925 I 0.706
SMAR012602 Strigamia maritima SMAR012602 I 0.706
SMAD9 Ornithorhynchus anatinus ENSOANG00000015497 I 0.706
Alligator_sinensis_CCG012577.1 Alligator sinensis Alligator_sinensis_CCG012577.1 I 0.706
ENSFALG00000008280 Ficedula albicollis ENSFALG00000008280 I 0.706
Brh_R009512 Buceros rhinoceros Brh_R009512 I 0.706
SMAD9 Gallus gallus ENSGALG00000017050 I 0.706
Gfo_R005758 Geospiza fortis Gfo_R005758 I 0.706
ENSMEUG00000007556 Macropus eugenii ENSMEUG00000007556 I 0.706
SMAD9 Meleagris gallopavo ENSMGAG00000015060 I 0.706
Aan_R005227 Calypte anna Aan_R005227 I 0.706
BGIBMGA010481 Bombyx mori BGIBMGA010481 I 0.703
D918_06928 Trichuris suis D918_06928 I 0.703
TsM_000781600 Taenia solium TsM_000781600 I 0.703
TTRE_0000645601 Trichuris trichiura TTRE_0000645601 I 0.703
ENSPFOG00000015984 Poecilia formosa ENSPFOG00000015984 I 0.703
smad9 Oryzias latipes ENSORLG00000003956 I 0.703
ENSXMAG00000008595 Xiphophorus maculatus ENSXMAG00000008595 I 0.703
L798_03803 Zootermopsis nevadensis L798_03803 I 0.703
SMAD9 Taeniopygia guttata ENSTGUG00000011897 I 0.703
ENSPFOG00000015910 Poecilia formosa ENSPFOG00000015910 I 0.703
ENSSTOG00000010836 Ictidomys tridecemlineatus ENSSTOG00000010836 I 0.702
SMAD1 Homo sapiens ENSG00000170365 D 0.701
LDEC015977 Leptinotarsa decemlineata LDEC015977 I 0.700