Alligator_sinensis_CCG004626.1 (Alligator sinensis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Alligator_sinensis_CCG004626.1 T325264_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Smad3
M00192_2.00 		Mus musculus
NNNNNMGMCN
NGKCKNNNNN		 PBM
Badis et al.(2009)
Smad3_3805 		0.813 0.813
SMAD3
M03482_2.00 		Homo sapiens
YGTCTAGACA
TGTCTAGACR		 SELEX
Jolma et al.(2013)
SMAD3_1 		0.813 0.813
SMAD3
M09380_2.00 		Homo sapiens
NBCTSHCWSCWB
VWGSWGDSAGVN		 Misc
Kulakovskiy et al.(2013)
SMAD3_HUMAN.H11MO.0.B 		0.813 0.813
Smad3
M09384_2.00 		Mus musculus
NBCTSHCWSCWB
VWGSWGDSAGVN		 Misc
Kulakovskiy et al.(2013)
SMAD3_MOUSE.H11MO.0.B 		0.813 0.813
Smad3
M09637_2.00 		Mus musculus
BYAGMCWN
NWGKCTRV		 Misc
Heinz et al.(2010)
NPC-Smad3_GSE36673 		0.813 0.813
SMAD3
M11283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6_01 		0.813 0.813
SMAD3
M11284_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6_02 		0.813 0.813
SMAD3
M11285_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6 		0.813 0.813
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG004626.1 SMAD 4 83

Links

Other SMAD family TFs
Other Alligator sinensis TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000007006 Anas platyrhynchos ENSAPLG00000007006 I 1.000
SMAD3 Meleagris gallopavo ENSMGAG00000009879 I 1.000
ENSPSIG00000010579 Pelodiscus sinensis ENSPSIG00000010579 I 1.000
Brh_R001115 Buceros rhinoceros Brh_R001115 I 1.000
Tal_R001210 Tyto alba Tal_R001210 I 1.000
SMAD3 Homo sapiens ENSG00000166949 D 0.953
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I 0.938
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I 0.938
Pvit_04529 Pogona vitticeps Pvit_04529 I 0.867
ENSSHAG00000012543 Sarcophilus harrisii ENSSHAG00000012543 I 0.863
Smad3 Mus musculus ENSMUSG00000032402 D 0.859
SMAD3 Felis catus ENSFCAG00000027081 I 0.853
Cmyd_10013581 Chelonia mydas Cmyd_10013581 I 0.853
SMAD3 Anolis carolinensis ENSACAG00000009914 I 0.840
ENSGALG00000007870 Gallus gallus ENSGALG00000007870 I 0.840
ENSMPUG00000000304 Mustela putorius furo ENSMPUG00000000304 I 0.840
Aan_R005610 Calypte anna Aan_R005610 I 0.840
Afo_R015053 Aptenodytes forsteri Afo_R015053 I 0.840
ENSFALG00000012861 Ficedula albicollis ENSFALG00000012861 I 0.827
SMAD3 Monodelphis domestica ENSMODG00000009609 I 0.827
Gfo_R005908 Geospiza fortis Gfo_R005908 I 0.827
smad3 Xenopus tropicalis XB-GENE-481992 I 0.827
ENSAMEG00000003318 Ailuropoda melanoleuca ENSAMEG00000003318 I 0.813
SMAD3 Bos taurus ENSBTAG00000012599 I 0.813
SMAD3 Canis familiaris ENSCAFG00000017388 I 0.813
SMAD3 Callithrix jacchus ENSCJAG00000002088 I 0.813
SMAD3 Cavia porcellus ENSCPOG00000021314 I 0.813
ENSCSAG00000013275 Chlorocebus sabaeus ENSCSAG00000013275 I 0.813
SMAD3 Dasypus novemcinctus ENSDNOG00000044090 I 0.813
ENSLACG00000010552 Latimeria chalumnae ENSLACG00000010552 I 0.813
ENSMEUG00000016668 Macropus eugenii ENSMEUG00000016668 I 0.813
SMAD3 Microcebus murinus ENSMICG00000006119 I 0.813
SMAD3 Myotis lucifugus ENSMLUG00000002185 I 0.813
SMAD3 Macaca mulatta ENSMMUG00000015455 I 0.813
ENSNLEG00000012983 Nomascus leucogenys ENSNLEG00000012983 I 0.813
SMAD3 Otolemur garnettii ENSOGAG00000014217 I 0.813
SMAD3 Ochotona princeps ENSOPRG00000014996 I 0.813
ENSPANG00000016627 Papio anubis ENSPANG00000016627 I 0.813
SMAD3 Procavia capensis ENSPCAG00000008103 I 0.813
ENSPPYG00000006583 Pongo abelii ENSPPYG00000006583 I 0.813
SMAD3 Pan troglodytes ENSPTRG00000007199 I 0.813
SMAD3 Pteropus vampyrus ENSPVAG00000002626 I 0.813
Smad3 Rattus norvegicus ENSRNOG00000008620 I 0.813
SMAD3 Sus scrofa ENSSSCG00000004952 I 0.813
ENSSTOG00000010286 Ictidomys tridecemlineatus ENSSTOG00000010286 I 0.813
ENSTBEG00000003884 Tupaia belangeri ENSTBEG00000003884 I 0.813
SMAD3 Taeniopygia guttata ENSTGUG00000009470 I 0.813
ENSP00000332973-D1 Bos grunniens ENSP00000332973-D1 I 0.813
Myotis_brandtii_Smad3_10022298 Myotis brandtii Myotis_brandtii_Smad3_10022298 I 0.813
SMAD3 Equus caballus ENSECAG00000020259 I 0.800
smad3a Danio rerio ENSDARG00000036096 I 0.787
ENSGALG00000014184 Gallus gallus ENSGALG00000014184 I 0.787
Aan_R002236 Calypte anna Aan_R002236 I 0.787
AAB39329 Xenopus laevis AAB39329 I 0.787
ENSLOCG00000013897 Lepisosteus oculatus ENSLOCG00000013897 I 0.773
ENSONIG00000004109 Oreochromis niloticus ENSONIG00000004109 I 0.773
ENSORLG00000011834 Oryzias latipes ENSORLG00000011834 I 0.773
ENSPFOG00000006336 Poecilia formosa ENSPFOG00000006336 I 0.773
smad3a Tetraodon nigroviridis ENSTNIG00000009546 I 0.773
smad3a Takifugu rubripes ENSTRUG00000016858 I 0.773
ENSXMAG00000002377 Xiphophorus maculatus ENSXMAG00000002377 I 0.773
smad2.S Xenopus laevis XB-GENE-864923 I 0.773
ENSAMXG00000002880 Astyanax mexicanus ENSAMXG00000002880 I 0.760
ENSONIG00000013271 Oreochromis niloticus ENSONIG00000013271 I 0.760
ENSONIG00000015464 Oreochromis niloticus ENSONIG00000015464 I 0.760
ENSPFOG00000004885 Poecilia formosa ENSPFOG00000004885 I 0.760
smad3b Takifugu rubripes ENSTRUG00000014802 I 0.760
ISCW001846 Ixodes scapularis ISCW001846 I 0.760
SMAR008230 Strigamia maritima SMAR008230 I 0.760
smad3b Gasterosteus aculeatus ENSGACG00000005092 I 0.747
ENSGMOG00000008364 Gadus morhua ENSGMOG00000008364 I 0.747
ENSTRUG00000002512 Takifugu rubripes ENSTRUG00000002512 I 0.747
ENSXMAG00000004505 Xiphophorus maculatus ENSXMAG00000004505 I 0.747
ENSP00000332973 Macaca fascicularis ENSP00000332973 I 0.747
ENSPMAG00000004234 Petromyzon marinus ENSPMAG00000004234 I 0.733
L798_14024 Zootermopsis nevadensis L798_14024 I 0.733
NEMVEDRAFT_v1g168041 Nematostella vectensis NEMVEDRAFT_v1g168041 I 0.733
SPU_017642 Strongylocentrotus purpuratus SPU_017642 I 0.733
Sakowv30032201m.g Saccoglossus kowalevskii Sakowv30032201m.g I 0.733
CapteG167863 Capitella teleta CapteG167863 I 0.720
DAPPUDRAFT_314805 Daphnia pulex DAPPUDRAFT_314805 I 0.720
ENSETEG00000017446 Echinops telfairi ENSETEG00000017446 I 0.720
TriadG49742 Trichoplax adhaerens TriadG49742 I 0.720
GB42213 Apis mellifera GB42213 N 0.710
CGI_10017370 Crassostrea gigas CGI_10017370 I 0.707