estExt_fgenesh1_pm.C_sca_5_chr5_3_00060 (Nectria haematococca)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 estExt_fgenesh1_pm.C_sca_5_chr5_3_00060 T196117_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sub-1
M01235_2.00 		Neurospora crassa
NVMGATCGRNN
NNYCGATCKBN		 PBM
Lambert et al.(2019)
pTH8614 		0.836 0.943
gtaG
M02007_2.00 		Dictyostelium discoideum
NDNBAGATBN
NVATCTVNHN		 PBM
Weirauch et al.(2014)
pTH5531 		0.805 0.657
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pm.C_sca_5_chr5_3_00060 GATA 408 442

Links

Other GATA family TFs
Other Nectria haematococca TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA027821 Oryza indica BGIOSGA027821 I 0.000
BRADI3G12910 Brachypodium distachyon BRADI3G12910 I 0.000
F775_28679 Aegilops tauschii F775_28679 I 0.000
GRMZM2G125596 Zea mays GRMZM2G125596 I 0.000
GRMZM2G405699 Zea mays GRMZM2G405699 I 0.000
LPERR08G00120 Leersia perrieri LPERR08G00120 I 0.000
MLOC_37086 Hordeum vulgare MLOC_37086 I 0.000
OB08G10110 Oryza brachyantha OB08G10110 I 0.000
OBART08G00060 Oryza barthii OBART08G00060 I 0.000
OGLUM08G00080 Oryza glumaepatula OGLUM08G00080 I 0.000
OLONG_014444 Oryza longistaminata OLONG_014444 I 0.000
ONIVA08G00050 Oryza nivara ONIVA08G00050 I 0.000
ORUFI08G00070 Oryza rufipogon ORUFI08G00070 I 0.000
IDEF1 Oryza sativa OS08G0101000 D 0.000
Pavir.Fa02368 Panicum virgatum Pavir.Fa02368 I 0.000
Pavir.Fb00027 Panicum virgatum Pavir.Fb00027 I 0.000
Sb07g000220 Sorghum bicolor Sb07g000220 I 0.000
Si015586m.g Setaria italica Si015586m.g I 0.000
Traes_7AL_C0DB55E98 Triticum aestivum Traes_7AL_C0DB55E98 I 0.000
Traes_7BL_6183FA9D4 Triticum aestivum Traes_7BL_6183FA9D4 I 0.000
TRIUR3_27457 Triticum urartu TRIUR3_27457 I 0.000