GCM2 (Pteropus vampyrus)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSPVAG00000004876 T198051_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.919 0.919
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.919 0.919
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.919 0.919
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.919 0.919
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.844 0.844
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.822 0.822
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.815 0.815
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.696 0.696
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.696 0.696
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.689 0.689
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.689 0.689
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.681 0.681
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.681 0.681
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.681 0.681
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.681 0.681
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.681 0.681
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.681 0.681
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.681 0.681
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.681 0.681
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.681 0.681
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.644 0.644
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.644 0.644
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.644 0.644
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.637 0.637
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.637 0.637
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.637 0.637
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.637 0.637
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000004616 GCM 35 169

Links

Other GCM family TFs
Other Pteropus vampyrus TFs

201 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.000
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.000
Bo3g040110 Brassica oleracea Bo3g040110 N 0.000
Bostr.27991s0069 Boechera stricta Bostr.27991s0069 N 0.000
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.000
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.000
Cla013460 Citrullus lanatus Cla013460 N 0.000
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.000
RAP2.7 Arabidopsis lyrata fgenesh2_kg.4__825__AT2G28550.1 N 0.000
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.000
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.000
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.000
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.000
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.000
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.000
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.000
OGLUM05G01570 Oryza glumaepatula OGLUM05G01570 N 0.000
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.000
OMERI05G01620 Oryza meridionalis OMERI05G01620 N 0.000
ONIVA05G01600 Oryza nivara ONIVA05G01600 N 0.000
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.000
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.000
ORUFI05G01620 Oryza rufipogon ORUFI05G01620 N 0.000
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.000
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.000
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.000
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.000
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.000
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.000
Sb09g002080 Sorghum bicolor Sb09g002080 N 0.000
Solyc09g007260.2 Solanum lycopersicum Solyc09g007260.2 N 0.000
TCM_022077 Theobroma cacao TCM_022077 I 0.000
TCM_042000 Theobroma cacao TCM_042000 I 0.000
TCM_043051 Theobroma cacao TCM_043051 N 0.000
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.000