CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc11g012510.1
(
Solanum lycopersicum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Solyc11g012510.1
T201589_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc11g012510.1.1
GRAS
172
542
LKELLDACAEAVSDADISTAEALMSALEQRVSVSGEPMERLGAYVLEGIRARLLSSGSIIYKKLKCKEPTGLELLSYMQVIFNMCPYYKFAYMSANVVINEAMMNENRIHIIDFQIAQGSQWMFLLHYLAHRPGGPPFVRITGVDDDESAYARGGGLQLVGKRLAEVAKSCGVPFEFHGAALSGCEVQLENLRVKHGEALAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESIDAARPRDDKERISAEEHCVARDVVNIIACEGADRVERHELFGKWRLRLMMAGFTQCQLSPSVGETIKHMLKEYSPNYRYAEGEGALYLGWKNRALATSSAWR
Links
Other
GRAS
family TFs
Other
Solanum lycopersicum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10014811m.g
Citrus clementina
Ciclev10014811m.g
N
0.721
SCL13
Arabidopsis lyrata
fgenesh2_kg.7__2586__AT4G17230.1
N
0.725
GLYMA07G39650
Glycine max
GLYMA07G39650
N
0.702
GLYMA17G01150
Glycine max
GLYMA17G01150
N
0.702
mgf007403m
Mimulus guttatus
mgf007403m
N
0.772
mgf018899m
Mimulus guttatus
mgf018899m
N
0.722
orange1.1g008984m.g
Citrus sinensis
orange1.1g008984m.g
N
0.718
PGSC0003DMG400008442
Solanum tuberosum
PGSC0003DMG400008442
N
0.772
PGSC0003DMG400013356
Solanum tuberosum
PGSC0003DMG400013356
N
0.962
PGSC0003DMG400023556
Solanum tuberosum
PGSC0003DMG400023556
N
0.824
Pm012494
Prunus mume
Pm012494
N
0.705
PRUPE_ppa003910mg
Prunus persica
PRUPE_ppa003910mg
N
0.707
Solyc04g014830.1
Solanum lycopersicum
Solyc04g014830.1
N
0.808
TCM_030393
Theobroma cacao
TCM_030393
N
0.710
SCL13
Vitis vinifera
VIT_00s0463g00020
N
0.748