CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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30169.m006225
(
Ricinus communis
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
30169.m006225
T202034_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30169.m006225
GRAS
244
615
SKHTLVEAASAIYDGKTEVASEILTRVSQVSNPRGNSEQRLMEYMSMALKSRLNSADNPPPVAELFAKEHIASTQLLYELSPCFKLGFMAANLAILQSTVDQPNSGTGFHVIDFDIGQGCQYLNLLHALSERLNGKPATVKITAVADNSAEEKERLKVVGTTLSQLAEQFGVSLHFNVVSAKLGDLSRESLGCEPEEPLAVNFAFNLYRMPDESVSTENPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFMARVNEGSSYYGALFESIESTVQRDHTERVKVEEGLGRKLANSVACEGRDRVERCEVFGKWRARMGMAGFELKPVSQNIAESLKARLSSGNRVNPGFTVKEDNGGVCFGWMGKTLTVASAWR
Links
Other
GRAS
family TFs
Other
Ricinus communis
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava18974.valid.m1
Manihot esculenta
cassava18974.valid.m1
N
0.836
cassava7265.valid.m1
Manihot esculenta
cassava7265.valid.m1
N
0.847
Ciclev10004502m.g
Citrus clementina
Ciclev10004502m.g
N
0.762
Eucgr.A02754
Eucalyptus grandis
Eucgr.A02754
N
0.718
evm.TU.supercontig_107.91
Carica papaya
evm.TU.supercontig_107.91
N
0.729
gene13212-v1.0-hybrid
Fragaria vesca
gene13212-v1.0-hybrid
N
0.708
Gorai.006G050200
Gossypium raimondii
Gorai.006G050200
N
0.707
Gorai.006G198300
Gossypium raimondii
Gorai.006G198300
N
0.723
Gorai.007G012300
Gossypium raimondii
Gorai.007G012300
N
0.718
Lus10039265.g
Linum usitatissimum
Lus10039265.g
N
0.702
orange1.1g041667m.g
Citrus sinensis
orange1.1g041667m.g
N
0.762
POPTR_0004s07700
Populus trichocarpa
POPTR_0004s07700
N
0.762
POPTR_0017s01730
Populus trichocarpa
POPTR_0017s01730
N
0.742
SapurV1A.0147s0170
Salix purpurea
SapurV1A.0147s0170
N
0.742
SapurV1A.1012s0040
Salix purpurea
SapurV1A.1012s0040
N
0.737
TCM_015228
Theobroma cacao
TCM_015228
N
0.777