CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000275704
(
Malus domestica
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
MDP0000275704
T202851_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000275704
GRAS
431
793
LLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLMNNPATFPPPRTLTPFDVFFKMGAYKVFSEVSPLLQFVNFTCNQALLEALSDADQIHIVDFDIGFGAHWASFMQELPTRNRGISAPSLRITAFASPSTHHPVELGLMRDNLTQFANEIGISFELDVVNLDYLDQNSYSLPIFQTNDSEAVAVNFPIWSTSNQPDALPNVLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAVNVTSDAVSKIERFLLQPKIESTVLGRLRTPDKMPIWKALFASAGFTPVPFSNFTETQAECVVKRNPARGFHVEKRQESLVLCWQRRELISASAWR
Links
Other
GRAS
family TFs
Other
Malus domestica
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29916.m000544
Ricinus communis
29916.m000544
N
0.816
cassava30062.valid.m1
Manihot esculenta
cassava30062.valid.m1
N
0.827
Ciclev10018916m.g
Citrus clementina
Ciclev10018916m.g
N
0.804
Cla005738
Citrullus lanatus
Cla005738
N
0.807
Cucsa.320850
Cucumis sativus
Cucsa.320850
N
0.813
evm.TU.supercontig_29.139
Carica papaya
evm.TU.supercontig_29.139
N
0.830
gene31749-v1.0-hybrid
Fragaria vesca
gene31749-v1.0-hybrid
N
0.850
Gorai.003G170700
Gossypium raimondii
Gorai.003G170700
N
0.723
Gorai.004G200600
Gossypium raimondii
Gorai.004G200600
N
0.743
Gorai.008G238300
Gossypium raimondii
Gorai.008G238300
N
0.782
Lus10004353.g
Linum usitatissimum
Lus10004353.g
N
0.830
Lus10028934.g
Linum usitatissimum
Lus10028934.g
N
0.818
orange1.1g042460m.g
Citrus sinensis
orange1.1g042460m.g
N
0.749
PK22905.1
Cannabis sativa
PK22905.1
N
0.821
Pm023512
Prunus mume
Pm023512
N
0.913
POPTR_0001s00480
Populus trichocarpa
POPTR_0001s00480
N
0.807
POPTR_0003s11020
Populus trichocarpa
POPTR_0003s11020
N
0.796
PRUPE_ppa001561mg
Prunus persica
PRUPE_ppa001561mg
N
0.916
SapurV1A.0324s0040
Salix purpurea
SapurV1A.0324s0040
N
0.785
SapurV1A.0325s0140
Salix purpurea
SapurV1A.0325s0140
N
0.779
TCM_015991
Theobroma cacao
TCM_015991
N
0.796
VIT_02s0154g00400
Vitis vinifera
VIT_02s0154g00400
N
0.743