SIX3 (Canis familiaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCAFG00000002547 T207559_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 1.000
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 1.000
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 1.000
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 1.000
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.947
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.947
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.947
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.947
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.982
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.982
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.982
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000003708 Homeodomain 211 267

Links

Other Homeodomain family TFs
Other Canis familiaris TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001561 Ricinus communis 29900.m001561 I
AC233933.1_FG001 Zea mays AC233933.1_FG001 I
BGIOSGA024428 Oryza indica BGIOSGA024428 I
BGIOSGA024429 Oryza indica BGIOSGA024429 I
BGIOSGA031313 Oryza indica BGIOSGA031313 I
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I
F775_01237 Aegilops tauschii F775_01237 N
F775_22649 Aegilops tauschii F775_22649 N
GLYMA02G00870 Glycine max GLYMA02G00870 I
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I
GRMZM2G073258 Zea mays GRMZM2G073258 I
GRMZM2G123119 Zea mays GRMZM2G123119 I
GRMZM5G837876 Zea mays GRMZM5G837876 I
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I
LPERR07G06830 Leersia perrieri LPERR07G06830 I
LPERR09G16380 Leersia perrieri LPERR09G16380 I
mgf022372m Mimulus guttatus mgf022372m I
MLOC_43207 Hordeum vulgare MLOC_43207 I
MTR_1g069940 Medicago truncatula MTR_1g069940 I
MTR_7g096830 Medicago truncatula MTR_7g096830 I
OB09G27130 Oryza brachyantha OB09G27130 I
OBART07G11330 Oryza barthii OBART07G11330 I
OBART07G11340 Oryza barthii OBART07G11340 I
OBART09G20410 Oryza barthii OBART09G20410 I
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I
OLONG_005597 Oryza longistaminata OLONG_005597 I
ONIVA01G50300 Oryza nivara ONIVA01G50300 I
ONIVA07G09500 Oryza nivara ONIVA07G09500 I
ONIVA09G20840 Oryza nivara ONIVA09G20840 I
OPUNC07G10310 Oryza punctata OPUNC07G10310 I
OPUNC09G18690 Oryza punctata OPUNC09G18690 I
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I
OS07G0410700 Oryza sativa OS07G0410700 I
OS09G0572000 Oryza sativa OS09G0572000 I
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I
Pavir.Bb00653 Panicum virgatum Pavir.Bb00653 I
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I
Pavir.J01078 Panicum virgatum Pavir.J01078 I
Pavir.J02630 Panicum virgatum Pavir.J02630 I
Pavir.J30299 Panicum virgatum Pavir.J30299 I
Pavir.J37124 Panicum virgatum Pavir.J37124 I
Sb02g012630 Sorghum bicolor Sb02g012630 I
Sb05g026843 Sorghum bicolor Sb05g026843 I
Si027485m.g Setaria italica Si027485m.g I
Si028088m.g Setaria italica Si028088m.g I
Si028135m.g Setaria italica Si028135m.g I
Si028219m.g Setaria italica Si028219m.g I
Si031946m.g Setaria italica Si031946m.g I
TCM_004052 Theobroma cacao TCM_004052 I
Traes_2AL_9E90C2488 Triticum aestivum Traes_2AL_9E90C2488 N
Traes_2BL_304012B04 Triticum aestivum Traes_2BL_304012B04 N
Traes_2BL_3A3353970 Triticum aestivum Traes_2BL_3A3353970 N
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I
TRIUR3_16508 Triticum urartu TRIUR3_16508 I
TRIUR3_29784 Triticum urartu TRIUR3_29784 I