ENSORLG00000013083 (Oryzias latipes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSORLG00000013083 T213939_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.860 0.930
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.860 0.930
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.848 0.930
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.848 0.930
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.848 0.930
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.848 0.930
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.848 0.930
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.848 0.930
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.848 0.930
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.848 0.930
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.848 0.930
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.848 0.930
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.848 0.895
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.848 0.895
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.848 0.895
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.848 0.895
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.848 0.895
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.848 0.895
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.848 0.895
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.848 0.895
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.844 0.895
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.844 0.895
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.844 0.895
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.837 0.912
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.837 0.860
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.837 0.860
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.837 0.860
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.837 0.860
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.837 0.860
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.837 0.860
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.837 0.860
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.837 0.860
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.837 0.860
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.837 0.860
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.837 0.860
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.812 0.860
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.812 0.842
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.812 0.842
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.812 0.842
Q9GP48_9TURB
M02217_2.00 		Discocelis tigrina
DTAATTAB
VTAATTAH		 PBM
Weirauch et al.(2014)
pTH6515 		0.658 0.737
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.651 0.719
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.608 0.544
Nkx2-6
M00496_2.00 		Mus musculus
HYAAGTRBNN
NNVYACTTRD		 PBM
Berger et al.(2008)
Nkx2-6_3437 		0.601 0.456
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000016396 Homeodomain 29 85

Links

Other Homeodomain family TFs
Other Oryzias latipes TFs

372 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003248 Ricinus communis 29889.m003248 I 0.000
30128.m008883 Ricinus communis 30128.m008883 N 0.000
AMTR_s00025p00250380 Amborella trichopoda AMTR_s00025p00250380 N 0.000
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.000
GATA16 Arabidopsis thaliana AT5G49300 D 0.000
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.000
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.000
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.000
Bo00847s050 Brassica oleracea Bo00847s050 I 0.000
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.000
Bra020650 Brassica rapa Bra020650 I 0.000
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.000
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.000
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.000
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.000
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.000
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.000
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.000
Ca_02992 Cicer arietinum Ca_02992 I 0.000
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.000
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.000
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.000
Cla005266 Citrullus lanatus Cla005266 N 0.000
Cla009422 Citrullus lanatus Cla009422 I 0.000
Cla022104 Citrullus lanatus Cla022104 I 0.000
CME102C Cyanidioschyzon merolae CME102C N 0.000
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.000
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.000
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.000
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.000
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.000
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.000
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.000
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.000
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.000
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.000
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.000
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.000
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.000
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.000
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.000
GRMZM2G138967 Zea mays GRMZM2G138967 N 0.000
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.000
GSMUA_Achr7G03800_001 Musa acuminata GSMUA_Achr7G03800_001 N 0.000
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N 0.000
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.000
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.000
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.000
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.000
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.000
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.000
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.000
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.000
MDP0000309902 Malus domestica MDP0000309902 I 0.000
mgf003937m Mimulus guttatus mgf003937m I 0.000
mgf011737m Mimulus guttatus mgf011737m N 0.000
mgf022078m Mimulus guttatus mgf022078m I 0.000
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.000
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.000
OB01G55040 Oryza brachyantha OB01G55040 I 0.000
OBART03G39750 Oryza barthii OBART03G39750 I 0.000
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.000
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.000
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.000
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.000
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.000
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.000
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.000
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.000
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.000
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.000
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.000
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.000
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.000
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.000
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.000
OS01G0976800 Oryza sativa OS01G0976800 I 0.000
OS03G0831200 Oryza sativa OS03G0831200 I 0.000
Pavir.Ab00108 Panicum virgatum Pavir.Ab00108 N 0.000
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.000
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.000
PK18820.1 Cannabis sativa PK18820.1 I 0.000
PK21934.1 Cannabis sativa PK21934.1 I 0.000
Pm003128 Prunus mume Pm003128 I 0.000
Pm008287 Prunus mume Pm008287 I 0.000
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.000
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.000
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.000
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.000
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.000
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.000
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.000
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.000
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.000
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.000
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.000
Si002983m.g Setaria italica Si002983m.g I 0.000
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.000
TCM_004753 Theobroma cacao TCM_004753 I 0.000
TCM_021303 Theobroma cacao TCM_021303 I 0.000
TCM_026732 Theobroma cacao TCM_026732 I 0.000
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.000
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.000
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.000
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.000
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.000
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.000