CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ab00108
(
Panicum virgatum
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Pavir.Ab00108
T196724_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ab00108.1.p
GATA
37
72
CAACHTTKTPLWRGGPEGPKSLCNACGIRYRKRRQA
Links
Other
GATA
family TFs
Other
Panicum virgatum
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G138967
Zea mays
GRMZM2G138967
N
0.836
Sb03g047520
Sorghum bicolor
Sb03g047520
I
0.836
Si002983m.g
Setaria italica
Si002983m.g
I
0.836
Pavir.Eb04066
Panicum virgatum
Pavir.Eb04066
I
0.836
F775_43556
Aegilops tauschii
F775_43556
I
0.829
Traes_5BL_F258582BB
Triticum aestivum
Traes_5BL_F258582BB
I
0.829
BGIOSGA000005
Oryza indica
BGIOSGA000005
I
0.825
BRADI2G62660
Brachypodium distachyon
BRADI2G62660
I
0.825
LPERR04G11580
Leersia perrieri
LPERR04G11580
I
0.825
MLOC_54886
Hordeum vulgare
MLOC_54886
I
0.825
OB01G55040
Oryza brachyantha
OB01G55040
I
0.825
OBART01G45830
Oryza barthii
OBART01G45830
I
0.825
OGLUM01G50190
Oryza glumaepatula
OGLUM01G50190
I
0.825
OLONG_011157
Oryza longistaminata
OLONG_011157
I
0.825
ONIVA01G52080
Oryza nivara
ONIVA01G52080
I
0.825
ORGLA01G0395900
Oryza glaberrima
ORGLA01G0395900
I
0.825
ORUFI01G49320
Oryza rufipogon
ORUFI01G49320
I
0.825
OS01G0976800
Oryza sativa
OS01G0976800
I
0.825
Traes_3AL_6DE434492
Triticum aestivum
Traes_3AL_6DE434492
I
0.825
TRAES3BF026000060CFD_g
Triticum aestivum
TRAES3BF026000060CFD_g
I
0.825
TRIUR3_03165
Triticum urartu
TRIUR3_03165
I
0.825
VIT_14s0060g01520
Vitis vinifera
VIT_14s0060g01520
I
0.825
AMTR_s00147p00053080
Amborella trichopoda
AMTR_s00147p00053080
N
0.811
Gorai.013G206400
Gossypium raimondii
Gorai.013G206400
N
0.811
PRUPE_ppa015310mg
Prunus persica
PRUPE_ppa015310mg
I
0.810
Pm003128
Prunus mume
Pm003128
I
0.810
GSMUA_Achr11G17770_001
Musa acuminata
GSMUA_Achr11G17770_001
I
0.809
Bra020650
Brassica rapa
Bra020650
I
0.807
CME102C
Cyanidioschyzon merolae
CME102C
N
0.805