CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc10g005330.2
(
Solanum lycopersicum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Solyc10g005330.2
T223623_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.821
0.860
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.821
0.860
ATML1
M10626_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.821
0.860
PDF2
M10625_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.821
0.860
HDG9
M10628_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.813
0.684
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.804
0.737
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.804
0.737
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.799
0.737
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.788
0.772
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.788
0.772
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.788
0.772
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.783
0.702
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.783
0.702
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.746
0.737
HDG7
M10629_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.746
0.737
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc10g005330.2.1
Homeodomain
59
115
KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMKS
Links
Other
Homeodomain
family TFs
Other
Solanum lycopersicum
TFs
616 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28345.m000111
Ricinus communis
28345.m000111
N
29603.m000536
Ricinus communis
29603.m000536
I
Al_scaffold_0409_3
Arabidopsis lyrata
Al_scaffold_0409_3
I
ZFP11
Arabidopsis thaliana
AT2G42410
I
SUP
Arabidopsis thaliana
AT3G23130
I
AT4G17810
Arabidopsis thaliana
AT4G17810
I
RBE
Arabidopsis thaliana
AT5G06070
D
BGIOSGA015610
Oryza indica
BGIOSGA015610
I
BGIOSGA018378
Oryza indica
BGIOSGA018378
I
BGIOSGA033510
Oryza indica
BGIOSGA033510
I
Bo1g017920
Brassica oleracea
Bo1g017920
I
Bo1g102390
Brassica oleracea
Bo1g102390
I
Bo3g003640
Brassica oleracea
Bo3g003640
I
Bo9g176590
Brassica oleracea
Bo9g176590
I
Bostr.13129s0367
Boechera stricta
Bostr.13129s0367
I
Bostr.19424s0332
Boechera stricta
Bostr.19424s0332
I
Bostr.25993s0539
Boechera stricta
Bostr.25993s0539
I
Bostr.30275s0246
Boechera stricta
Bostr.30275s0246
I
Bra005874
Brassica rapa
Bra005874
I
Bra009160
Brassica rapa
Bra009160
I
Bra013257
Brassica rapa
Bra013257
I
Bra023759
Brassica rapa
Bra023759
I
Cagra.2117s0055
Capsella grandiflora
Cagra.2117s0055
I
Cagra.2636s0028
Capsella grandiflora
Cagra.2636s0028
I
Cagra.3356s0074
Capsella grandiflora
Cagra.3356s0074
I
Cagra.3462s0001
Capsella grandiflora
Cagra.3462s0001
I
Carubv10002935m.g
Capsella rubella
Carubv10002935m.g
I
Carubv10006881m.g
Capsella rubella
Carubv10006881m.g
I
Carubv10016073m.g
Capsella rubella
Carubv10016073m.g
I
Carubv10024766m.g
Capsella rubella
Carubv10024766m.g
I
cassava14614.m1
Manihot esculenta
cassava14614.m1
I
cassava22028.m1
Manihot esculenta
cassava22028.m1
I
cassava3359.m1
Manihot esculenta
cassava3359.m1
I
cassava40050.m1
Manihot esculenta
cassava40050.m1
I
cassava4410.m1
Manihot esculenta
cassava4410.m1
N
Ca_12901
Cicer arietinum
Ca_12901
I
Ciclev10006961m.g
Citrus clementina
Ciclev10006961m.g
I
Cla008944
Citrullus lanatus
Cla008944
I
Cla016442
Citrullus lanatus
Cla016442
I
Cla021878
Citrullus lanatus
Cla021878
I
Cucsa.255130
Cucumis sativus
Cucsa.255130
I
Cucsa.313240
Cucumis sativus
Cucsa.313240
I
Cucsa.321760
Cucumis sativus
Cucsa.321760
I
evm.TU.supercontig_44.99
Carica papaya
evm.TU.supercontig_44.99
I
e_gw1.1.457.1
Physcomitrella patens
e_gw1.1.457.1
I
e_gw1.6.268.1
Physcomitrella patens
e_gw1.6.268.1
I
F775_00917
Aegilops tauschii
F775_00917
I
F775_21953
Aegilops tauschii
F775_21953
I
SUP
Arabidopsis lyrata
fgenesh2_kg.3__2524__AT3G23130.1
I
RBE
Arabidopsis lyrata
fgenesh2_kg.6__542__AT5G06070.1
I
gene08240-v1.0-hybrid
Fragaria vesca
gene08240-v1.0-hybrid
I
GLYMA11G34285
Glycine max
GLYMA11G34285
I
GLYMA12G35930
Glycine max
GLYMA12G35930
I
GLYMA13G34450
Glycine max
GLYMA13G34450
I
Gorai.002G256500
Gossypium raimondii
Gorai.002G256500
N
Gorai.005G047800
Gossypium raimondii
Gorai.005G047800
I
Gorai.006G247700
Gossypium raimondii
Gorai.006G247700
I
Gorai.008G226800
Gossypium raimondii
Gorai.008G226800
I
Gorai.012G106300
Gossypium raimondii
Gorai.012G106300
I
GRMZM2G000126
Zea mays
GRMZM2G000126
I
GRMZM2G137736
Zea mays
GRMZM2G137736
I
GSMUA_Achr7G26850_001
Musa acuminata
GSMUA_Achr7G26850_001
I
LjSGA_038753.2
Lotus japonicus
LjSGA_038753.2
I
LPERR04G01660
Leersia perrieri
LPERR04G01660
I
LPERR05G08090
Leersia perrieri
LPERR05G08090
I
Lus10022206.g
Linum usitatissimum
Lus10022206.g
I
MDP0000225209
Malus domestica
MDP0000225209
I
mg013419m
Mimulus guttatus
mg013419m
I
MLOC_76482
Hordeum vulgare
MLOC_76482
I
MTR_1g070265
Medicago truncatula
MTR_1g070265
I
OB02G10110
Oryza brachyantha
OB02G10110
I
OB04G12040
Oryza brachyantha
OB04G12040
I
OB05G18710
Oryza brachyantha
OB05G18710
I
OBART04G02370
Oryza barthii
OBART04G02370
I
OBART05G10090
Oryza barthii
OBART05G10090
I
OBART11G23770
Oryza barthii
OBART11G23770
I
OGLUM04G02100
Oryza glumaepatula
OGLUM04G02100
I
OGLUM05G10360
Oryza glumaepatula
OGLUM05G10360
I
OGLUM11G22950
Oryza glumaepatula
OGLUM11G22950
I
OLONG_005038
Oryza longistaminata
OLONG_005038
I
OLONG_022667
Oryza longistaminata
OLONG_022667
I
OLONG_023754
Oryza longistaminata
OLONG_023754
I
OMERI04G02610
Oryza meridionalis
OMERI04G02610
I
OMERI07G13080
Oryza meridionalis
OMERI07G13080
I
ONIVA04G01910
Oryza nivara
ONIVA04G01910
I
ONIVA06G26970
Oryza nivara
ONIVA06G26970
I
ONIVA11G23290
Oryza nivara
ONIVA11G23290
I
OPUNC05G08760
Oryza punctata
OPUNC05G08760
I
OPUNC11G05640
Oryza punctata
OPUNC11G05640
I
orange1.1g041626m.g
Citrus sinensis
orange1.1g041626m.g
I
ORGLA05G0088100
Oryza glaberrima
ORGLA05G0088100
I
ORUFI04G03150
Oryza rufipogon
ORUFI04G03150
I
ORUFI05G10920
Oryza rufipogon
ORUFI05G10920
I
ORUFI11G25670
Oryza rufipogon
ORUFI11G25670
I
OS04G0168100
Oryza sativa
OS04G0168100
I
OS05G0286100
Oryza sativa
OS05G0286100
I
OS11G0707300
Oryza sativa
OS11G0707300
I
Pavir.Aa03593
Panicum virgatum
Pavir.Aa03593
I
Pavir.Ab00024
Panicum virgatum
Pavir.Ab00024
I
Pavir.Gb02516
Panicum virgatum
Pavir.Gb02516
I
Pavir.J31403
Panicum virgatum
Pavir.J31403
I
PDK_20s1313421g001
Phoenix dactylifera
PDK_20s1313421g001
I
PDK_20s1360411g001
Phoenix dactylifera
PDK_20s1360411g001
I
PGSC0003DMG400017271
Solanum tuberosum
PGSC0003DMG400017271
I
PGSC0003DMG400040225
Solanum tuberosum
PGSC0003DMG400040225
I
Pm002649
Prunus mume
Pm002649
N
Pm009420
Prunus mume
Pm009420
I
POPTR_0002s04260
Populus trichocarpa
POPTR_0002s04260
I
POPTR_0008s16390
Populus trichocarpa
POPTR_0008s16390
I
POPTR_0010s08530
Populus trichocarpa
POPTR_0010s08530
I
POPTR_0016s10480
Populus trichocarpa
POPTR_0016s10480
I
PRUPE_ppa015007mg
Prunus persica
PRUPE_ppa015007mg
I
SapurV1A.0006s1030
Salix purpurea
SapurV1A.0006s1030
I
SapurV1A.0007s0790
Salix purpurea
SapurV1A.0007s0790
I
SapurV1A.0292s0200
Salix purpurea
SapurV1A.0292s0200
I
SapurV1A.0378s0150
Salix purpurea
SapurV1A.0378s0150
I
Sb06g001730
Sorghum bicolor
Sb06g001730
I
scaffold_403098.1
Arabidopsis lyrata
scaffold_403098.1
I
Si019050m.g
Setaria italica
Si019050m.g
I
Si024070m.g
Setaria italica
Si024070m.g
I
Solyc06g053720.1
Solanum lycopersicum
Solyc06g053720.1
I
Solyc09g089590.1
Solanum lycopersicum
Solyc09g089590.1
I
TCM_021875
Theobroma cacao
TCM_021875
I
TCM_021876
Theobroma cacao
TCM_021876
N
Thhalv10015420m.g
Eutrema salsugineum
Thhalv10015420m.g
I
Thhalv10017870m.g
Eutrema salsugineum
Thhalv10017870m.g
I
Thhalv10021992m.g
Eutrema salsugineum
Thhalv10021992m.g
I
Traes_1AL_80D0BD0DC
Triticum aestivum
Traes_1AL_80D0BD0DC
I
Traes_1BL_4026DC5011
Triticum aestivum
Traes_1BL_4026DC5011
I
TRIUR3_03721
Triticum urartu
TRIUR3_03721
I
TRIUR3_04794
Triticum urartu
TRIUR3_04794
I
VIT_05s0049g00070
Vitis vinifera
VIT_05s0049g00070
I
VIT_05s0049g00080
Vitis vinifera
VIT_05s0049g00080
I