Bostr.13129s0367 (Boechera stricta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Bostr.13129s0367 T142571_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBE
M01858_2.00 		Arabidopsis thaliana
NNNASWN
NWSTNNN		 PBM
Weirauch et al.(2014)
pTH7538 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.13129s0367.1.p C2H2 ZF 54 76

Links

Other C2H2 ZF family TFs
Other Boechera stricta TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RBE Arabidopsis thaliana AT5G06070 D 0.827
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.827
Bo9g176590 Brassica oleracea Bo9g176590 I 0.827
Bra009160 Brassica rapa Bra009160 I 0.827
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.827
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.827
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.827
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.827
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.827
OB05G18710 Oryza brachyantha OB05G18710 I 0.827
OBART05G10090 Oryza barthii OBART05G10090 I 0.827
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.827
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.827
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.827
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.827
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.827
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.827
OS05G0286100 Oryza sativa OS05G0286100 I 0.827
TCM_021875 Theobroma cacao TCM_021875 I 0.827
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.827
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.827
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.827
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.827
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.827
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.827
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.827
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.827
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.824
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.824
GLYMA11G34285 Glycine max GLYMA11G34285 I 0.817
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I 0.817
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.805
MTR_7g063220 Medicago truncatula MTR_7g063220 I 0.794
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I 0.794
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.779
ZFP11 Arabidopsis thaliana AT2G42410 I 0.779
SUP Arabidopsis thaliana AT3G23130 I 0.779
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.779
Bo1g102390 Brassica oleracea Bo1g102390 I 0.779
Bo3g003640 Brassica oleracea Bo3g003640 I 0.779
Bra005874 Brassica rapa Bra005874 I 0.779
Bra023759 Brassica rapa Bra023759 I 0.779
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.779
OBART11G23770 Oryza barthii OBART11G23770 I 0.779
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.779
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.779
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.779
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.779
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.779
OS11G0707300 Oryza sativa OS11G0707300 I 0.779
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.779
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.779
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.779
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.779
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.779
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.779
Si019050m.g Setaria italica Si019050m.g I 0.779
Si024070m.g Setaria italica Si024070m.g I 0.779
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.779
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.779
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.779
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.779
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.779
Pm009420 Prunus mume Pm009420 I 0.779
29603.m000536 Ricinus communis 29603.m000536 I 0.779
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.779
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.779
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.779
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.779
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.779
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.779
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.779
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.779
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.779
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.779
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.779
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.779
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.779
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.779
MDP0000225209 Malus domestica MDP0000225209 I 0.779
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.779
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.779
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.779
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.779
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.779
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.779
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.779
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.779
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.779
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.779
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.779
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.777
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.777
Ca_12901 Cicer arietinum Ca_12901 I 0.777
mg013419m Mimulus guttatus mg013419m I 0.777
F775_00917 Aegilops tauschii F775_00917 I 0.776
AT4G17810 Arabidopsis thaliana AT4G17810 I 0.769
Bo1g017920 Brassica oleracea Bo1g017920 I 0.769
Bra013257 Brassica rapa Bra013257 I 0.769
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.769
OB02G10110 Oryza brachyantha OB02G10110 I 0.769
OPUNC11G05640 Oryza punctata OPUNC11G05640 I 0.769
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.769
Cla008944 Citrullus lanatus Cla008944 I 0.769
Cla021878 Citrullus lanatus Cla021878 I 0.769
cassava22028.m1 Manihot esculenta cassava22028.m1 I 0.769
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.769
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.769
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.769
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.769
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.769
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.769
Si011797m.g Setaria italica Si011797m.g I 0.767
Lus10000705.g Linum usitatissimum Lus10000705.g I 0.767
Lus10024875.g Linum usitatissimum Lus10024875.g I 0.767
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I 0.766
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.766
OB02G44430 Oryza brachyantha OB02G44430 I 0.766
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.766
Si019563m.g Setaria italica Si019563m.g I 0.766
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I 0.766
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I 0.766
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.766
BGIOSGA015610 Oryza indica BGIOSGA015610 I 0.757
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.757
F775_21953 Aegilops tauschii F775_21953 I 0.757
GRMZM2G137736 Zea mays GRMZM2G137736 I 0.757
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.757
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.757
LPERR04G01660 Leersia perrieri LPERR04G01660 I 0.757
OB04G12040 Oryza brachyantha OB04G12040 I 0.757
OBART04G02370 Oryza barthii OBART04G02370 I 0.757
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I 0.757
OLONG_022667 Oryza longistaminata OLONG_022667 I 0.757
OMERI04G02610 Oryza meridionalis OMERI04G02610 I 0.757
ONIVA04G01910 Oryza nivara ONIVA04G01910 I 0.757
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I 0.757
OS04G0168100 Oryza sativa OS04G0168100 I 0.757
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.757
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.757
Sb06g001730 Sorghum bicolor Sb06g001730 I 0.757
Si032478m.g Setaria italica Si032478m.g I 0.757
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.757
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.757
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.757
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.757
Cla016442 Citrullus lanatus Cla016442 I 0.757
Cucsa.313240 Cucumis sativus Cucsa.313240 I 0.757
mgf024356m Mimulus guttatus mgf024356m I 0.757
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.757
Lus10022204.g Linum usitatissimum Lus10022204.g I 0.757
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.757
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.757
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I 0.757
Pavir.J31403 Panicum virgatum Pavir.J31403 I 0.757
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.757
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.757