Gorai.006G247700 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.006G247700 T143031_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBE
M01858_2.00 		Arabidopsis thaliana
NNNASWN
NWSTNNN		 PBM
Weirauch et al.(2014)
pTH7538 		0.779 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G247700.1 C2H2 ZF 44 66

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.827
ZFP11 Arabidopsis thaliana AT2G42410 I 0.827
SUP Arabidopsis thaliana AT3G23130 I 0.827
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.827
Bo1g102390 Brassica oleracea Bo1g102390 I 0.827
Bo3g003640 Brassica oleracea Bo3g003640 I 0.827
Bra005874 Brassica rapa Bra005874 I 0.827
Bra023759 Brassica rapa Bra023759 I 0.827
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.827
OBART11G23770 Oryza barthii OBART11G23770 I 0.827
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.827
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.827
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.827
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.827
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.827
OS11G0707300 Oryza sativa OS11G0707300 I 0.827
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.827
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.827
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.827
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.827
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.827
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.827
Si024070m.g Setaria italica Si024070m.g I 0.827
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.827
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.827
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.827
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.827
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.827
Pm009420 Prunus mume Pm009420 I 0.827
29603.m000536 Ricinus communis 29603.m000536 I 0.827
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.827
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.827
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.827
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.827
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.827
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.827
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.827
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.827
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.827
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.827
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.827
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.827
MDP0000225209 Malus domestica MDP0000225209 I 0.827
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.827
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.827
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.827
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.827
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.827
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.827
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.827
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.827
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.825
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.825
Ca_12901 Cicer arietinum Ca_12901 I 0.825
AT4G17810 Arabidopsis thaliana AT4G17810 I 0.817
Bo1g017920 Brassica oleracea Bo1g017920 I 0.817
Bra013257 Brassica rapa Bra013257 I 0.817
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.817
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.817
Cla021878 Citrullus lanatus Cla021878 I 0.817
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.817
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.817
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.817
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.817
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.817
Si011797m.g Setaria italica Si011797m.g I 0.815
BGIOSGA015610 Oryza indica BGIOSGA015610 I 0.805
F775_21953 Aegilops tauschii F775_21953 I 0.805
GRMZM2G137736 Zea mays GRMZM2G137736 I 0.805
LPERR04G01660 Leersia perrieri LPERR04G01660 I 0.805
OB04G12040 Oryza brachyantha OB04G12040 I 0.805
OBART04G02370 Oryza barthii OBART04G02370 I 0.805
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I 0.805
OLONG_022667 Oryza longistaminata OLONG_022667 I 0.805
OMERI04G02610 Oryza meridionalis OMERI04G02610 I 0.805
ONIVA04G01910 Oryza nivara ONIVA04G01910 I 0.805
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I 0.805
OS04G0168100 Oryza sativa OS04G0168100 I 0.805
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.805
Sb06g001730 Sorghum bicolor Sb06g001730 I 0.805
Cla016442 Citrullus lanatus Cla016442 I 0.805
Cucsa.313240 Cucumis sativus Cucsa.313240 I 0.805
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I 0.805
Pavir.J31403 Panicum virgatum Pavir.J31403 I 0.805
TCM_021876 Theobroma cacao TCM_021876 N 0.803
28345.m000111 Ricinus communis 28345.m000111 N 0.803
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.803
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.803
Pm002649 Prunus mume Pm002649 N 0.794
RBE Arabidopsis thaliana AT5G06070 D 0.779
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.779
Bo9g176590 Brassica oleracea Bo9g176590 I 0.779
Bra009160 Brassica rapa Bra009160 I 0.779
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.779
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.779
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.779
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.779
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.779
OB05G18710 Oryza brachyantha OB05G18710 I 0.779
OBART05G10090 Oryza barthii OBART05G10090 I 0.779
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.779
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.779
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.779
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.779
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.779
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.779
OS05G0286100 Oryza sativa OS05G0286100 I 0.779
Si019050m.g Setaria italica Si019050m.g I 0.779
TCM_021875 Theobroma cacao TCM_021875 I 0.779
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.779
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.779
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.779
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.779
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.779
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.779
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.779
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.779
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.779
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.779
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.779
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.779
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.779
mg013419m Mimulus guttatus mg013419m I 0.777
F775_00917 Aegilops tauschii F775_00917 I 0.776
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.776
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.776
GLYMA11G34285 Glycine max GLYMA11G34285 I 0.769
OB02G10110 Oryza brachyantha OB02G10110 I 0.769
OPUNC11G05640 Oryza punctata OPUNC11G05640 I 0.769
Cla008944 Citrullus lanatus Cla008944 I 0.769
cassava22028.m1 Manihot esculenta cassava22028.m1 I 0.769
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.769
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I 0.769
Lus10000705.g Linum usitatissimum Lus10000705.g I 0.767
Lus10024875.g Linum usitatissimum Lus10024875.g I 0.767
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I 0.766
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.766
OB02G44430 Oryza brachyantha OB02G44430 I 0.766
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.766
Si019563m.g Setaria italica Si019563m.g I 0.766
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I 0.766
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I 0.766
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.766
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.757
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.757
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.757
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.757
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.757
Si032478m.g Setaria italica Si032478m.g I 0.757
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.757
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.757
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.757
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.757
mgf024356m Mimulus guttatus mgf024356m I 0.757
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.757
Lus10022204.g Linum usitatissimum Lus10022204.g I 0.757
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.757
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.757
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.757
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.757