Pm023405 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm023405 T226675_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.832 0.895
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.832 0.895
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.824 0.807
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.803 0.877
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.803 0.877
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.803 0.877
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.793 0.877
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.793 0.877
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.793 0.842
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.684
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm023405 Homeodomain 144 200

Links

Other Homeodomain family TFs
Other Prunus mume TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10027385 Crassostrea gigas CGI_10027385 N 0.000
ENSCING00000011300 Ciona intestinalis ENSCING00000011300 N 0.000
ENSPMAG00000010089 Petromyzon marinus ENSPMAG00000010089 I 0.000
e_gw.260.36.1 Branchiostoma floridae e_gw.260.36.1 I 0.000
e_gw.260.37.1 Branchiostoma floridae e_gw.260.37.1 I 0.000
gw.38.210.1 Branchiostoma floridae gw.38.210.1 I 0.000
HmN_000400200 Hymenolepis microstoma HmN_000400200 I 0.000
LotgiG100031 Lottia gigantea LotgiG100031 N 0.000
Ocbimv22015181m.g Octopus bimaculoides Ocbimv22015181m.g N 0.000
Sakowv30000860m.g Saccoglossus kowalevskii Sakowv30000860m.g I 0.000
Sakowv30025348m.g Saccoglossus kowalevskii Sakowv30025348m.g I 0.000
SMU15029209 Schmidtea mediterranea SMU15029209 I 0.000
SNAPOd2T00003836001 Oikopleura dioica SNAPOd2T00003836001 I 0.000
SNAPOd2T00025381001 Oikopleura dioica SNAPOd2T00025381001 I 0.000
SPU_000388 Strongylocentrotus purpuratus SPU_000388 I 0.000
SPU_002631 Strongylocentrotus purpuratus SPU_002631 I 0.000