cassava24238.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava24238.valid.m1 T227072_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.840 0.809
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava24238.valid.m1 Homeodomain 363 412

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_05704 Exophiala aquamarina A1O9_05704 N
AAY98914 Xenopus tropicalis AAY98914 I
ACOM029353 Anopheles coluzzii ACOM029353 I
AMEC000538 Anopheles melas AMEC000538 I
AOL_s00081g337 Arthrobotrys oligospora AOL_s00081g337 N
Brh_R004116 Buceros rhinoceros Brh_R004116 N
CAA46605 Xenopus laevis CAA46605 N
CFIO01_04514 Colletotrichum fioriniae CFIO01_04514 N
csin108932 Clonorchis sinensis csin108932 I
DRE_00029 Drechslerella stenobrocha DRE_00029 N
SOX4 Canis familiaris ENSCAFG00000024883 I
SOX4 Choloepus hoffmanni ENSCHOG00000002300 I
SOX12 Dasypus novemcinctus ENSDNOG00000044763 N
ENSECAG00000006516 Equus caballus ENSECAG00000006516 I
SOX8 Equus caballus ENSECAG00000016320 I
ENSLOCG00000011834 Lepisosteus oculatus ENSLOCG00000011834 I
ENSOARG00000000906 Ovis aries ENSOARG00000000906 I
ENSP00000244745 Macaca fascicularis ENSP00000244745 I
ENSP00000322568 Macaca fascicularis ENSP00000322568 I
ENSPANG00000005859 Papio anubis ENSPANG00000005859 I
ENSSTOG00000011011 Ictidomys tridecemlineatus ENSSTOG00000011011 I
GLOINDRAFT_323774 Rhizophagus irregularis GLOINDRAFT_323774 N
GLOINDRAFT_347803 Rhizophagus irregularis GLOINDRAFT_347803 N
GPLIN_000596700 Globodera pallida GPLIN_000596700 I
GPLIN_000970900 Globodera pallida GPLIN_000970900 N
gw.110.115.1 Branchiostoma floridae gw.110.115.1 N
H072_9933 Dactylellina haptotyla H072_9933 N
Hba_21281 Heterorhabditis bacteriophora Hba_21281 N
L798_12049 Zootermopsis nevadensis L798_12049 I
LDEC019307 Leptinotarsa decemlineata LDEC019307 N
MESCA012239 Megaselia scalaris MESCA012239 I
Myotis_brandtii_SOX2_10019709 Myotis brandtii Myotis_brandtii_SOX2_10019709 I
Ogr08337 Ophisaurus gracilis Ogr08337 N
PDIP_33190 Penicillium digitatum PDIP_33190 N
PEX1_064750 Penicillium expansum PEX1_064750 N
PFICI_02946 Pestalotiopsis fici PFICI_02946 N
PPAI003639 Phlebotomus papatasi PPAI003639 N
PXEA_0002992801 Protopolystoma xenopodis PXEA_0002992801 N
Sjc_0107520 Schistosoma japonicum Sjc_0107520 N
SMU15030186 Schmidtea mediterranea SMU15030186 N
SPER_0001708101 Spirometra erinaceieuropaei SPER_0001708101 N
SPER_0001952401 Spirometra erinaceieuropaei SPER_0001952401 N
T265_14506 Opisthorchis viverrini T265_14506 I
TRE_0000259001 Trichobilharzia regenti TRE_0000259001 N
sox-2 Caenorhabditis elegans WBGene00004949 I
sox11 Xenopus tropicalis XB-GENE-483418 I
sox11.S Xenopus laevis XB-GENE-483422 I
sox11.L Xenopus laevis XB-GENE-6252061 I
sox13.S Xenopus laevis XB-GENE-865496 I
sox5.S Xenopus laevis XB-GENE-865667 I
XP_002935940 Xenopus tropicalis XP_002935940 N