CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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XP_002935940
(
Xenopus tropicalis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
XP_002935940
T335125_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002935940
Sox
1
67
MIARSKPDLCNKDISIHLGYEWRKLTEEQKKPYYDEAFKLDRQHQALFPDWKYEPKRRNKKYSDESA
Links
Other
Sox
family TFs
Other
Xenopus tropicalis
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SOX8
Equus caballus
ENSECAG00000016320
I
0.560
ENSLOCG00000011834
Lepisosteus oculatus
ENSLOCG00000011834
I
0.560
LDEC019307
Leptinotarsa decemlineata
LDEC019307
N
0.557
ENSPANG00000005859
Papio anubis
ENSPANG00000005859
I
0.556
Myotis_brandtii_SOX2_10019709
Myotis brandtii
Myotis_brandtii_SOX2_10019709
I
0.555
AMEC000538
Anopheles melas
AMEC000538
I
0.555
ENSSTOG00000011011
Ictidomys tridecemlineatus
ENSSTOG00000011011
I
0.549
SMU15030186
Schmidtea mediterranea
SMU15030186
N
0.536
SPER_0001708101
Spirometra erinaceieuropaei
SPER_0001708101
N
0.535
SPER_0001952401
Spirometra erinaceieuropaei
SPER_0001952401
N
0.535
TRE_0000259001
Trichobilharzia regenti
TRE_0000259001
N
0.530
MESCA012239
Megaselia scalaris
MESCA012239
I
0.529
sox-2
Caenorhabditis elegans
WBGene00004949
I
0.529
Ogr08337
Ophisaurus gracilis
Ogr08337
N
0.529
GPLIN_000970900
Globodera pallida
GPLIN_000970900
N
0.529
Hba_21281
Heterorhabditis bacteriophora
Hba_21281
N
0.529
ENSOARG00000000906
Ovis aries
ENSOARG00000000906
I
0.527
HMEL002398
Heliconius melpomene
HMEL002398
I
0.523
Sjc_0107520
Schistosoma japonicum
Sjc_0107520
N
0.523
PXEA_0002992801
Protopolystoma xenopodis
PXEA_0002992801
N
0.523
ACOM029353
Anopheles coluzzii
ACOM029353
I
0.520
HMEL006651
Heliconius melpomene
HMEL006651
I
0.517
ENSP00000322568
Macaca fascicularis
ENSP00000322568
I
0.514
PXEA_0000763901
Protopolystoma xenopodis
PXEA_0000763901
N
0.506
TTAC_0001064401
Hydatigera taeniaeformis
TTAC_0001064401
N
0.502
GPLIN_000596700
Globodera pallida
GPLIN_000596700
I
0.499
PPAI003639
Phlebotomus papatasi
PPAI003639
N
0.496
csin108932
Clonorchis sinensis
csin108932
I
0.490
ENSOANG00000002448
Ornithorhynchus anatinus
ENSOANG00000002448
I
0.485
L798_12049
Zootermopsis nevadensis
L798_12049
I
0.483
AOL_s00081g337
Arthrobotrys oligospora
AOL_s00081g337
N
0.482
CFIO01_04514
Colletotrichum fioriniae
CFIO01_04514
N
0.480
GLOINDRAFT_323774
Rhizophagus irregularis
GLOINDRAFT_323774
N
0.480
PDIP_33190
Penicillium digitatum
PDIP_33190
N
0.480
PEX1_064750
Penicillium expansum
PEX1_064750
N
0.480
sox5.S
Xenopus laevis
XB-GENE-865667
I
0.479
Brh_R004116
Buceros rhinoceros
Brh_R004116
N
0.478
DRE_00029
Drechslerella stenobrocha
DRE_00029
N
0.475
sox13.S
Xenopus laevis
XB-GENE-865496
I
0.472
PFICI_02946
Pestalotiopsis fici
PFICI_02946
N
0.471
H072_9933
Dactylellina haptotyla
H072_9933
N
0.467
AMEM007694
Anopheles merus
AMEM007694
N
0.466
POSPLDRAFT_104634
Postia placenta
POSPLDRAFT_104634
N
0.462
T265_14506
Opisthorchis viverrini
T265_14506
I
0.461
SOX2
Felis catus
ENSFCAG00000029205
I
0.460
SOX2
Procavia capensis
ENSPCAG00000003690
I
0.460
GYMLUDRAFT_143012
Gymnopus luxurians
GYMLUDRAFT_143012
N
0.460
YQE_08562
Dendroctonus ponderosae
YQE_08562
N
0.460
Afo_R012670
Aptenodytes forsteri
Afo_R012670
N
0.460
CAA46605
Xenopus laevis
CAA46605
N
0.460
HYDPIDRAFT_51400
Hydnomerulius pinastri
HYDPIDRAFT_51400
N
0.456
Gfo_R006305
Geospiza fortis
Gfo_R006305
I
0.456
sox9a
Tetraodon nigroviridis
ENSTNIG00000001901
N
0.455
GLOINDRAFT_83691
Rhizophagus irregularis
GLOINDRAFT_83691
N
0.455
GPLIN_001405800
Globodera pallida
GPLIN_001405800
I
0.455
UCREL1_469
Eutypa lata
UCREL1_469
N
0.454
UCREL1_749
Eutypa lata
UCREL1_749
N
0.454
CAA46607
Xenopus laevis
CAA46607
N
0.453
XP_002170844.1
Hydra magnipapillata
XP_002170844.1
I
0.451
fgenesh1_pg.C_scaffold_11000031
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_11000031
N
0.450
gw.110.115.1
Branchiostoma floridae
gw.110.115.1
N
0.449
RPRC013413
Rhodnius prolixus
RPRC013413
N
0.444
WALSEDRAFT_59420
Wallemia sebi
WALSEDRAFT_59420
N
0.443
A1O9_05704
Exophiala aquamarina
A1O9_05704
N
0.437
SERLA73DRAFT_139986
Serpula lacrymans
SERLA73DRAFT_139986
N
0.437
BGLB010902
Biomphalaria glabrata
BGLB010902
N
0.437
e_gw.60.194.1
Branchiostoma floridae
e_gw.60.194.1
N
0.435
PTTG_00444
Puccinia triticina
PTTG_00444
N
0.434
SOX12
Dasypus novemcinctus
ENSDNOG00000044763
N
0.433
MESCA006188
Megaselia scalaris
MESCA006188
N
0.433
MESCA006364
Megaselia scalaris
MESCA006364
N
0.433
RPRC001038
Rhodnius prolixus
RPRC001038
N
0.433
PLICRDRAFT_78649
Plicaturopsis crispa
PLICRDRAFT_78649
N
0.431
UCREL1_237
Eutypa lata
UCREL1_237
N
0.431
GLOINDRAFT_25375
Rhizophagus irregularis
GLOINDRAFT_25375
N
0.424
maker-nMf.1.1.scaf00287-augustus-gene-0.13
Meloidogyne floridensis
maker-nMf.1.1.scaf00287-augustus-gene-0.13
I
0.424
CNM02020
Cryptococcus neoformans
CNM02020
N
0.418
Sox17
Mus musculus
ENSMUSG00000025902
D
0.418
GLOINDRAFT_346686
Rhizophagus irregularis
GLOINDRAFT_346686
N
0.418