Carubv10004359m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10004359m.g T228286_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.826 0.681
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.617
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004359m Homeodomain 399 448

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

1006 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRF9 Arabidopsis thaliana AT2G45480 D 0.000
Bo4g195580 Brassica oleracea Bo4g195580 I 0.000
Bostr.25993s0227 Boechera stricta Bostr.25993s0227 I 0.000
Bra039334 Brassica rapa Bra039334 I 0.000
Cagra.0698s0014 Capsella grandiflora Cagra.0698s0014 I 0.000
Carubv10023501m.g Capsella rubella Carubv10023501m.g I 0.000
cassava28657.m1 Manihot esculenta cassava28657.m1 I 0.000
Cla021612 Citrullus lanatus Cla021612 N 0.000
Cucsa.257800 Cucumis sativus Cucsa.257800 N 0.000
AtGRF9 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002259 I 0.000
GLYMA01G34650 Glycine max GLYMA01G34650 N 0.000
GLYMA03G02500 Glycine max GLYMA03G02500 N 0.000
Gorai.007G092400 Gossypium raimondii Gorai.007G092400 N 0.000
MTR_8g035910 Medicago truncatula MTR_8g035910 N 0.000
PK07653.1 Cannabis sativa PK07653.1 I 0.000
Pm017948 Prunus mume Pm017948 N 0.000
POPTR_0014s06750 Populus trichocarpa POPTR_0014s06750 I 0.000
PRUPE_ppa021277mg Prunus persica PRUPE_ppa021277mg N 0.000
TCM_005483 Theobroma cacao TCM_005483 I 0.000
Thhalv10001460m.g Eutrema salsugineum Thhalv10001460m.g I 0.000
AtGRF9 Vitis vinifera VIT_15s0048g01740 I 0.000