Carubv10028391m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10028391m.g T228360_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZHD7
M02155_2.00 		Oryza sativa
NNWAANNNNN
NNNNNTTWNN		 PBM
Weirauch et al.(2014)
pTH6076 		0.651 0.582
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10028391m Homeodomain 100 158

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003297 Ricinus communis 29983.m003297 I 0.652
cassava39895.m1 Manihot esculenta cassava39895.m1 I 0.640
Ca_02034 Cicer arietinum Ca_02034 I 0.624
Ca_12172 Cicer arietinum Ca_12172 I 0.649
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I 0.627
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.616
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I 0.600
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.649
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I 0.649
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.671
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.651
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.641
MDP0000804580 Malus domestica MDP0000804580 I 0.628
mgf024641m Mimulus guttatus mgf024641m I 0.707
mgf026503m Mimulus guttatus mgf026503m I 0.648
MLOC_18998 Hordeum vulgare MLOC_18998 I 0.647
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.651
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.651
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.651
ZHD7 Oryza sativa OS02G0706600 D 0.651
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I 0.676
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.654
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.647
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.632
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I 0.651
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.647
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.671
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.609
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.609
Si020227m.g Setaria italica Si020227m.g I 0.673
TCM_001660 Theobroma cacao TCM_001660 I 0.627