gene14755-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene14755-v1.0-hybrid T228610_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZHD7
M02155_2.00 		Oryza sativa
NNWAANNNNN
NNNNNTTWNN		 PBM
Weirauch et al.(2014)
pTH6076 		0.652 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna14755.1-v1.0-hybrid Homeodomain 295 355

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000804580 Malus domestica MDP0000804580 I 0.839
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.828
Ca_02034 Cicer arietinum Ca_02034 I 0.811
TCM_001660 Theobroma cacao TCM_001660 I 0.761
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I 0.761
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I 0.739
mgf024641m Mimulus guttatus mgf024641m I 0.668
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.666
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.666
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.663
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.660
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.660
MLOC_18998 Hordeum vulgare MLOC_18998 I 0.657
mgf026503m Mimulus guttatus mgf026503m I 0.656
Ca_12172 Cicer arietinum Ca_12172 I 0.655
29983.m003297 Ricinus communis 29983.m003297 I 0.655
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.654
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.654
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I 0.654
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.654
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.652
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.652
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.652
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.652
ZHD7 Oryza sativa OS02G0706600 D 0.652
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I 0.652
Si020227m.g Setaria italica Si020227m.g I 0.652
cassava39895.m1 Manihot esculenta cassava39895.m1 I 0.643
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.643
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.629
Traes_4AL_5659286D11 Triticum aestivum Traes_4AL_5659286D11 N 0.604
Pavir.J22932 Panicum virgatum Pavir.J22932 N 0.604
Carubv10028391m.g Capsella rubella Carubv10028391m.g I 0.600