CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

bix1.1 *(Xenopus tropicalis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	XB-GENE-482521	T230464_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Mixl1 M10765_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MIXL1_03	0.720	0.649
Lhx1 M00405_2.00	Mus musculus	TRATDRNNN	NNNYHATYA	PBM Berger et al.(2008) Lhx1_2240	0.719	0.474
Lhx5 M00445_2.00	Mus musculus	TAATKRNNN	NNNYMATTA	PBM Berger et al.(2008) Lhx5_2279	0.719	0.474
LHX1 M05410_2.00	Homo sapiens	NTRATBRN	NYVATYAN	SELEX Yin et al.(2017) LHX1_eDBD_HT-SELEX	0.719	0.474
LHX5 M04936_2.00	Homo sapiens	NTAATTRS	SYAATTAN	SELEX Yin et al.(2017) LHX5_FL_HT-SELEX	0.719	0.474
LHX1 M05411_2.00	Homo sapiens	NHRAYGHN	NDCRTYDN	SELEX Yin et al.(2017) LHX1_eDBD_Methyl-HT-SELEX	0.719	0.474
LHX5 M04937_2.00	Homo sapiens	NTAAYGAN	NTCRTTAN	SELEX Yin et al.(2017) LHX5_FL_Methyl-HT-SELEX_1	0.719	0.474
LHX5 M04938_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) LHX5_FL_Methyl-HT-SELEX_2	0.719	0.474
MIXL1 M03231_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) MIXL1_1	0.715	0.632
MIXL1 M05359_2.00	Homo sapiens	TAATBNVATTA	TAATBNVATTA	SELEX Yin et al.(2017) MIXL1_FL_HT-SELEX	0.715	0.632
MIXL1 M10747_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MIXL1_02	0.715	0.632
MIXL1 M05360_2.00	Homo sapiens	TAATYNRATTA	TAATYNRATTA	SELEX Yin et al.(2017) MIXL1_FL_Methyl-HT-SELEX_1	0.715	0.632
MIXL1 M05361_2.00	Homo sapiens	TAATYDCRTTA	TAAYGHRATTA	SELEX Yin et al.(2017) MIXL1_FL_Methyl-HT-SELEX_2	0.715	0.632
Lim1 M03853_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Lim1_1	0.705	0.456
Lim1 M06529_2.00	Drosophila melanogaster	TTAATTA	TAATTAA	B1H Mathelier et al.(2014) MA0194.1	0.705	0.456
Lim1 M06332_2.00	Drosophila melanogaster	TTAATTA	TAATTAA	B1H Zhu et al.(2011) Lim1_Cell_FBgn0026411	0.705	0.456
Lim1 M06333_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Lim1_SOLEXA_FBgn0026411	0.705	0.456
Q0N4F9_NEMVE M02162_2.00	Nematostella vectensis	DTAATTAK	MTAATTAH	PBM Weirauch et al.(2014) pTH6150	0.702	0.544
RAX2 M03214_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) RAXL1_1	0.701	0.561
mixl1.S M02233_2.00	Xenopus laevis	NHTAATTAANN	NNTTAATTADN	PBM Weirauch et al.(2014) pTH6163	0.699	0.649
Sebox M02097_2.00	Mus musculus	NHTTAATTAN	NTAATTAADN	PBM Weirauch et al.(2014) pTH6379	0.697	0.561
Rax M00426_2.00	Mus musculus	NNTAATTRN	NYAATTANN	PBM Berger et al.(2008) Rax_3443	0.696	0.544
RAX M03149_2.00	Homo sapiens	NHTAATTRNN	NNYAATTADN	SELEX Jolma et al.(2013) RAX_1	0.696	0.544
RAX M05142_2.00	Homo sapiens	YYAATTRN	NYAATTRR	SELEX Yin et al.(2017) RAX_eDBD_HT-SELEX	0.696	0.544
Rax M10773_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RAX_04	0.696	0.544
RAX M05143_2.00	Homo sapiens	NTAAYRNN	NNYRTTAN	SELEX Yin et al.(2017) RAX_eDBD_Methyl-HT-SELEX_1	0.696	0.544
RAX M05144_2.00	Homo sapiens	YYAATTRN	NYAATTRR	SELEX Yin et al.(2017) RAX_eDBD_Methyl-HT-SELEX_2	0.696	0.544
Prrx2 M00486_2.00	Mus musculus	WRATNNN	NNNATYW	PBM Berger et al.(2008) Prrx2_3072	0.696	0.526
PRRX2 M03200_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) PRRX2_1	0.696	0.526
Prrx2 M03277_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Prrx2_1	0.696	0.526
CG9876 M03865_2.00	Drosophila melanogaster	SVTVATBRSN	NSYVATBABS	SELEX Nitta et al.(2015) CG9876_1	0.696	0.526
CG9876 M03866_2.00	Drosophila melanogaster	NTAATTRV	BYAATTAN	SELEX Nitta et al.(2015) CG9876_2	0.696	0.526
CG9876 M03867_2.00	Drosophila melanogaster	TAATYTAATTA	TAATTARATTA	SELEX Nitta et al.(2015) CG9876_3	0.696	0.526
CG9876 M03868_2.00	Drosophila melanogaster	TAATTRVNTAATTR	YAATTANBYAATTA	SELEX Nitta et al.(2015) CG9876_4	0.696	0.526
Rx M03840_2.00	Drosophila melanogaster	BTAATTRV	BYAATTAV	SELEX Nitta et al.(2015) Rx_1	0.696	0.526
Rx M03841_2.00	Drosophila melanogaster	NTAATBNSATTAN	NTAATSNVATTAN	SELEX Nitta et al.(2015) Rx_2	0.696	0.526
PRRX2 M05262_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) PRRX2_FL_HT-SELEX	0.696	0.526
PRRX2 M05258_2.00	Homo sapiens	NTNAYGHN	NDCRTNAN	SELEX Yin et al.(2017) PRRX2_eDBD_HT-SELEX_1	0.696	0.526
PRRX2 M05259_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) PRRX2_eDBD_HT-SELEX_2	0.696	0.526
Rx M06520_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Mathelier et al.(2014) MA0202.1	0.696	0.526
CG9876 M06537_2.00	Drosophila melanogaster	BTAATTR	YAATTAV	B1H Mathelier et al.(2014) MA0184.1	0.696	0.526
CG9876 M06350_2.00	Drosophila melanogaster	DBTAATTR	YAATTAVH	B1H Zhu et al.(2011) CG9876_Cell_FBgn0034821	0.696	0.526
CG9876 M06351_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) CG9876_SOLEXA_FBgn0034821	0.696	0.526
Rx M06317_2.00	Drosophila melanogaster	VYTAATTR	YAATTARB	B1H Zhu et al.(2011) Rx_Cell_FBgn0020617	0.696	0.526
Rx M06318_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Rx_SOLEXA_FBgn0020617	0.696	0.526
PRRX2 M09156_2.00	Homo sapiens	HTAATTR	YAATTAD	Misc Kulakovskiy et al.(2013) PRRX2_HUMAN.H11MO.0.C	0.696	0.526
Prrx2 M09207_2.00	Mus musculus	HTAATTR	YAATTAD	Misc Kulakovskiy et al.(2013) PRRX2_MOUSE.H11MO.0.C	0.696	0.526
PRRX2 M10735_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PRRX2_05	0.696	0.526
PRRX2 M10776_2.00	Sus scrofa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PRX2_Q2	0.696	0.526
Prrx2 M10767_2.00	Mus musculus	HNVHTAATTRRNHNDW	WHNDNYYAATTADBND	Transfac Matys et al.(2006) V$S8_01	0.696	0.526
PRRX2 M05260_2.00	Homo sapiens	NTAAYGHN	NDCRTTAN	SELEX Yin et al.(2017) PRRX2_eDBD_Methyl-HT-SELEX_1	0.696	0.526
PRRX2 M05261_2.00	Homo sapiens	NTAATYRN	NYRATTAN	SELEX Yin et al.(2017) PRRX2_eDBD_Methyl-HT-SELEX_2	0.696	0.526
PRRX2 M05263_2.00	Homo sapiens	NTAATTRR	YYAATTAN	SELEX Yin et al.(2017) PRRX2_FL_Methyl-HT-SELEX_1	0.696	0.526
PRRX2 M05264_2.00	Homo sapiens	HTAAYGHN	NDCRTTAD	SELEX Yin et al.(2017) PRRX2_FL_Methyl-HT-SELEX_2	0.696	0.526
ESX1 M00292_2.00	Homo sapiens	NNTAATNDN	NHNATTANN	PBM Barrera et al.(2016) ESX1_REF	0.696	0.509
Prrx1 M00431_2.00	Mus musculus	TAATTRNN	NNYAATTA	PBM Berger et al.(2008) Prrx1_3442	0.696	0.509
ESX1 M03137_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) ESX1_1	0.696	0.509
ESX1 M03138_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) ESX1_2	0.696	0.509
PRRX1 M03120_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) PRRX1_1	0.696	0.509
PRRX1 M03121_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) PRRX1_2	0.696	0.509
PRRX1 M03122_2.00	Homo sapiens	TAATTVRRTTA	TAAYYBAATTA	SELEX Jolma et al.(2013) PRRX1_3	0.696	0.509
ESX1 M05087_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ESX1_eDBD_HT-SELEX	0.696	0.509
ESX1 M05089_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ESX1_FL_HT-SELEX	0.696	0.509
Prrx1 M10770_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PMX1_01	0.696	0.509
PRRX1 M10675_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PMX1_Q6	0.696	0.509
ESX1 M05088_2.00	Homo sapiens	NTAATTRR	YYAATTAN	SELEX Yin et al.(2017) ESX1_eDBD_Methyl-HT-SELEX	0.696	0.509
ESX1 M05090_2.00	Homo sapiens	NTAATTRR	YYAATTAN	SELEX Yin et al.(2017) ESX1_FL_Methyl-HT-SELEX	0.696	0.509
PROP1 M00317_2.00	Homo sapiens	HAAYNNNNNN	NNNNNNRTTD	PBM Barrera et al.(2016) PROP1_REF	0.690	0.596
PROP1 M03216_2.00	Homo sapiens	TAATTHRATTA	TAATYDAATTA	SELEX Jolma et al.(2013) PROP1_1	0.690	0.596
PROP1 M03217_2.00	Homo sapiens	TAATKNRRTTA	TAAYYNMATTA	SELEX Jolma et al.(2013) PROP1_2	0.690	0.596
PROP1 M05298_2.00	Homo sapiens	WAATTNNRTTD	HAAYNNAATTW	SELEX Yin et al.(2017) PROP1_eDBD_HT-SELEX	0.690	0.596
PROP1 M05301_2.00	Homo sapiens	TAATTNVATTA	TAATBNAATTA	SELEX Yin et al.(2017) PROP1_FL_HT-SELEX	0.690	0.596
PROP1 M10777_2.00	Sus scrofa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PROP1_01	0.690	0.596
PROP1 M10737_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PROP1_Q2	0.690	0.596
PROP1 M05299_2.00	Homo sapiens	TAATTNVRTTW	WAAYBNAATTA	SELEX Yin et al.(2017) PROP1_eDBD_Methyl-HT-SELEX_1	0.690	0.596
PROP1 M05300_2.00	Homo sapiens	TAAYNDCRTTA	TAAYGHNRTTA	SELEX Yin et al.(2017) PROP1_eDBD_Methyl-HT-SELEX_2	0.690	0.596
PROP1 M05302_2.00	Homo sapiens	TAATTNVRTTA	TAAYBNAATTA	SELEX Yin et al.(2017) PROP1_FL_Methyl-HT-SELEX_1	0.690	0.596
PROP1 M05303_2.00	Homo sapiens	TAATYRVRTTA	TAAYBYRATTA	SELEX Yin et al.(2017) PROP1_FL_Methyl-HT-SELEX_2	0.690	0.596
Prop1 M00498_2.00	Mus musculus	NRAKDDN	NHHMTYN	PBM Berger et al.(2008) Prop1_3949	0.690	0.579
Prop1 M09210_2.00	Mus musculus	TAATKRRATTA	TAATYYMATTA	Misc Kulakovskiy et al.(2013) PROP1_MOUSE.H11MO.0.C	0.690	0.579
PROP1 M00315_2.00	Homo sapiens	NNHNATNN	NNATNDNN	PBM Barrera et al.(2016) PROP1_R112Q	0.690	0.579
VSX1 M00269_2.00	Homo sapiens	NNWAAYNNN	NNNRTTWNN	PBM Barrera et al.(2016) VSX1_REF	0.687	0.526
Vsx1 M00459_2.00	Mus musculus	NNTAATDDN	NHHATTANN	PBM Berger et al.(2008) Vsx1_1728	0.687	0.526
Vsx1 M03267_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Vsx1_1	0.687	0.526
VSX1 M00266_2.00	Homo sapiens	NNTAAYNNN	NNNRTTANN	PBM Barrera et al.(2016) VSX1_G160D	0.687	0.526
VSX1 M00267_2.00	Homo sapiens	NNHAAYNNN	NNNRTTDNN	PBM Barrera et al.(2016) VSX1_Q175H	0.687	0.526
CG32532 M03874_2.00	Drosophila melanogaster	NTAAYBNVRTTAN	NTAAYBNVRTTAN	SELEX Nitta et al.(2015) CG32532_1	0.685	0.544
CG32532 M06547_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Mathelier et al.(2014) MA0179.1	0.685	0.544
CG32532 M06370_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Zhu et al.(2011) CG32532_Cell_FBgn0052532	0.685	0.544
CG32532 M06371_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) CG32532_SOLEXA_FBgn0052532	0.685	0.544
PHOX2B M00282_2.00	Homo sapiens	TAATTRRY	RYYAATTA	PBM Barrera et al.(2016) PHOX2B_REF	0.684	0.509
Phox2a M00400_2.00	Mus musculus	NNHAAYNN	NNRTTDNN	PBM Berger et al.(2008) Phox2a_3947	0.684	0.509
Phox2b M00401_2.00	Mus musculus	NNHAAYNN	NNRTTDNN	PBM Berger et al.(2008) Phox2b_3948	0.684	0.509
PHOX2A M03194_2.00	Homo sapiens	TAATTRVRTTA	TAAYBYAATTA	SELEX Jolma et al.(2013) PHOX2A_1	0.684	0.509
PHOX2B M03113_2.00	Homo sapiens	TAATTRVRTTA	TAAYBYAATTA	SELEX Jolma et al.(2013) PHOX2B_1	0.684	0.509
PHOX2B M03114_2.00	Homo sapiens	TAATTRVRTTA	TAAYBYAATTA	SELEX Jolma et al.(2013) PHOX2B_2	0.684	0.509
PHOX2A M05244_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) PHOX2A_eDBD_HT-SELEX	0.684	0.509
PHOX2B M05008_2.00	Homo sapiens	BTAATYRV	BYRATTAV	SELEX Yin et al.(2017) PHOX2B_eDBD_HT-SELEX	0.684	0.509
PHOX2B M05010_2.00	Homo sapiens	TAATTWRATTA	TAATYWAATTA	SELEX Yin et al.(2017) PHOX2B_FL_HT-SELEX	0.684	0.509
Phox2a M09564_2.00	Mus musculus	NTAATBNRATTA	TAATYNVATTAN	Misc Heinz et al.(2010) Neuron-Phox2a_GSE31456	0.684	0.509
PHOX2A M05245_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) PHOX2A_eDBD_Methyl-HT-SELEX	0.684	0.509
PHOX2B M05009_2.00	Homo sapiens	BTAATYRN	NYRATTAV	SELEX Yin et al.(2017) PHOX2B_eDBD_Methyl-HT-SELEX	0.684	0.509
PHOX2B M05011_2.00	Homo sapiens	TAATTHRATTA	TAATYDAATTA	SELEX Yin et al.(2017) PHOX2B_FL_Methyl-HT-SELEX	0.684	0.509
PHOX2B M00280_2.00	Homo sapiens	NNNHATAAWTDNN	NNHAWTTATDNNN	PBM Barrera et al.(2016) PHOX2B_R141G	0.684	0.491
PHOX2B M00281_2.00	Homo sapiens	NNNNNNNNRY	RYNNNNNNNN	PBM Barrera et al.(2016) PHOX2B_R141Q	0.684	0.491
PROP1 M00316_2.00	Homo sapiens	DTAATTRK	MYAATTAH	PBM Barrera et al.(2016) PROP1_R99Q	0.682	0.579
PHDP M03849_2.00	Drosophila melanogaster	NTAATKNVATTAN	NTAATBNMATTAN	SELEX Nitta et al.(2015) PHDP_1	0.679	0.491
PHDP M06525_2.00	Drosophila melanogaster	HTAATTD	HAATTAD	B1H Mathelier et al.(2014) MA0457.1	0.679	0.491
PHDP M06325_2.00	Drosophila melanogaster	HTAATT	AATTAD	B1H Zhu et al.(2011) PhdP_Cell_FBgn0025334	0.679	0.491
PHDP M06326_2.00	Drosophila melanogaster	YTAATT	AATTAR	B1H Zhu et al.(2011) PhdP_SOLEXA_FBgn0025334	0.679	0.491
al M03776_2.00	Drosophila melanogaster	TAAYBNVRTTA	TAAYBNVRTTA	SELEX Nitta et al.(2015) al_1	0.676	0.526
al M06477_2.00	Drosophila melanogaster	TAATTAA	TTAATTA	B1H Mathelier et al.(2014) MA0208.1	0.676	0.526
al M06212_2.00	Drosophila melanogaster	TAATTAA	TTAATTA	B1H Zhu et al.(2011) Al_Cell_FBgn0000061	0.676	0.526
al M06213_2.00	Drosophila melanogaster	NNYTAATTR	YAATTARNN	B1H Zhu et al.(2011) Al_SOLEXA_FBgn0000061	0.676	0.526
eve M00556_2.00	Drosophila melanogaster	NNTAATTARN	NYTAATTANN	PBM Busser et al.(2012a) Eve	0.675	0.509
eve M02115_2.00	Drosophila melanogaster	NTAATNDNN	NNHNATTAN	PBM Weirauch et al.(2014) pTH6436	0.675	0.509
eve M03794_2.00	Drosophila melanogaster	VYTAATKASN	NSTMATTARB	SELEX Nitta et al.(2015) eve_1	0.675	0.509
eve M06486_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0221.1	0.675	0.509
eve M06240_2.00	Drosophila melanogaster	DYTAATKA	TMATTARH	B1H Zhu et al.(2011) Eve_Cell_FBgn0000606	0.675	0.509
eve M06241_2.00	Drosophila melanogaster	HKBTAAYNDTKY	RMAHNRTTAVMD	B1H Zhu et al.(2011) eve_FlyReg_FBgn0000606	0.675	0.509
eve M06242_2.00	Drosophila melanogaster	NYTAATKA	TMATTARN	B1H Zhu et al.(2011) Eve_SOLEXA_FBgn0000606	0.675	0.509
eve M09678_2.00	Drosophila melanogaster	NKHTAATKD	HMATTADMN	Misc Kulakovskiy et al.(2009) eve	0.675	0.509
eve M10786_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$EVE_Q6	0.675	0.509
SHOX M02095_2.00	Homo sapiens	NTAATTRN	NYAATTAN	PBM Weirauch et al.(2014) pTH5805	0.675	0.491
Shox2 M00439_2.00	Mus musculus	NTAATDDN	NHHATTAN	PBM Berger et al.(2008) Shox2_2641	0.675	0.491
SHOX M03232_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) SHOX_1	0.675	0.491
SHOX2 M03204_2.00	Homo sapiens	BTAATTRN	NYAATTAV	SELEX Jolma et al.(2013) SHOX2_1	0.675	0.491
Shox2 M03263_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Shox2_1	0.675	0.491
CG5369 M03876_2.00	Drosophila melanogaster	TAATTHVATTA	TAATBDAATTA	SELEX Nitta et al.(2015) CG5369_1	0.675	0.491
CG5369 M03877_2.00	Drosophila melanogaster	TAATTRNNTAATBN	NVATTANNYAATTA	SELEX Nitta et al.(2015) CG5369_2	0.675	0.491
CG5369 M03878_2.00	Drosophila melanogaster	TAATTVRATWA	TWATYBAATTA	SELEX Nitta et al.(2015) CG5369_3	0.675	0.491
SHOX M05366_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) SHOX_eDBD_HT-SELEX	0.675	0.491
Shox2 M10772_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SHOX2_05	0.675	0.491
SHOX M05367_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) SHOX_eDBD_Methyl-HT-SELEX_1	0.675	0.491
SHOX M05368_2.00	Homo sapiens	NTAAYGAN	NTCRTTAN	SELEX Yin et al.(2017) SHOX_eDBD_Methyl-HT-SELEX_2	0.675	0.491
vsx2 M02079_2.00	Danio rerio	NNYTAATTARN	NYTAATTARNN	PBM Weirauch et al.(2014) pTH6221	0.674	0.509
VSX2 M00287_2.00	Homo sapiens	NYTAATTARN	NYTAATTARN	PBM Barrera et al.(2016) VSX2_REF	0.674	0.509
VSX2 M03124_2.00	Homo sapiens	YTAATTAN	NTAATTAR	SELEX Jolma et al.(2013) VSX2_1	0.674	0.509
VSX2 M05036_2.00	Homo sapiens	CTAATTAN	NTAATTAG	SELEX Yin et al.(2017) VSX2_eDBD_HT-SELEX	0.674	0.509
VSX2 M05039_2.00	Homo sapiens	GCYAATYWY	RWRATTRGC	SELEX Yin et al.(2017) VSX2_FL_HT-SELEX	0.674	0.509
Vsx2 M09180_2.00	Mus musculus	NNRGCTAATTAR	YTAATTAGCYNN	Misc Kulakovskiy et al.(2013) VSX2_MOUSE.H11MO.0.C	0.674	0.509
VSX2 M10676_2.00	Homo sapiens	HNNGCTAATTANBN	NVNTAATTAGCNND	Transfac Matys et al.(2006) V$CHX10_01	0.674	0.509
VSX2 M05037_2.00	Homo sapiens	VYAATTRR	YYAATTRB	SELEX Yin et al.(2017) VSX2_eDBD_Methyl-HT-SELEX_1	0.674	0.509
VSX2 M05038_2.00	Homo sapiens	NTAAYKHN	NDMRTTAN	SELEX Yin et al.(2017) VSX2_eDBD_Methyl-HT-SELEX_2	0.674	0.509
VSX2 M05040_2.00	Homo sapiens	NTAAYKVN	NBMRTTAN	SELEX Yin et al.(2017) VSX2_FL_Methyl-HT-SELEX_1	0.674	0.509
VSX2 M05041_2.00	Homo sapiens	GCYAATYWY	RWRATTRGC	SELEX Yin et al.(2017) VSX2_FL_Methyl-HT-SELEX_2	0.674	0.509
ARX M00264_2.00	Homo sapiens	NNWRATNNN	NNNATYWNN	PBM Barrera et al.(2016) ARX_REF	0.674	0.491
Alx3 M00402_2.00	Mus musculus	WAATNDN	NHNATTW	PBM Berger et al.(2008) Alx3_3418	0.674	0.491
Uncx M00443_2.00	Mus musculus	NTAATNDN	NHNATTAN	PBM Berger et al.(2008) Uncx4	0.674	0.491
Arx M00467_2.00	Mus musculus	NTAATTDN	NHAATTAN	PBM Berger et al.(2008) Arx_1738	0.674	0.491
uncx M02111_2.00	Tetraodon nigroviridis	NNTAATTRN	NYAATTANN	PBM Weirauch et al.(2014) pTH5474	0.674	0.491
ALX3 M03172_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) ALX3_1	0.674	0.491
ALX3 M03173_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) ALX3_2	0.674	0.491
ALX3 M03174_2.00	Homo sapiens	NTAATYNRATTAN	NTAATYNRATTAN	SELEX Jolma et al.(2013) ALX3_3	0.674	0.491
ARX M03076_2.00	Homo sapiens	NTAATYNRATTAN	NTAATYNRATTAN	SELEX Jolma et al.(2013) ARX_1	0.674	0.491
DRGX M03199_2.00	Homo sapiens	NTAATTNRATTAN	NTAATYNAATTAN	SELEX Jolma et al.(2013) DRGX_1	0.674	0.491
UNCX M03191_2.00	Homo sapiens	NWAATTVVRTHWN	NWDAYBBAATTWN	SELEX Jolma et al.(2013) UNCX_1	0.674	0.491
UNCX M03192_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) UNCX_2	0.674	0.491
Arx M03269_2.00	Mus musculus	NTAATYNRATTAN	NTAATYNRATTAN	SELEX Jolma et al.(2013) Arx_1	0.674	0.491
Uncx M03264_2.00	Mus musculus	NTAATTVRATTAN	NTAATYBAATTAN	SELEX Jolma et al.(2013) Uncx_1	0.674	0.491
Uncx M03265_2.00	Mus musculus	NTAATTRR	YYAATTAN	SELEX Jolma et al.(2013) Uncx_2	0.674	0.491
hbn M03813_2.00	Drosophila melanogaster	HTAATYTAATTAD	HTAATTARATTAD	SELEX Nitta et al.(2015) hbn_1	0.674	0.491
Pph13 M03845_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Pph13_1	0.674	0.491
ALX3 M05195_2.00	Homo sapiens	NTAATTRR	YYAATTAN	SELEX Yin et al.(2017) ALX3_eDBD_HT-SELEX	0.674	0.491
ALX3 M05198_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ALX3_FL_HT-SELEX	0.674	0.491
ARX M04895_2.00	Homo sapiens	BTAATTRR	YYAATTAV	SELEX Yin et al.(2017) ARX_eDBD_HT-SELEX	0.674	0.491
DRGX M05253_2.00	Homo sapiens	NTAATTRR	YYAATTAN	SELEX Yin et al.(2017) DRGX_eDBD_HT-SELEX	0.674	0.491
UNCX M05240_2.00	Homo sapiens	NYAATTRV	BYAATTRN	SELEX Yin et al.(2017) UNCX_eDBD_HT-SELEX	0.674	0.491
hbn M06506_2.00	Drosophila melanogaster	TTAATTR	YAATTAA	B1H Mathelier et al.(2014) MA0226.1	0.674	0.491
Pph13 M06522_2.00	Drosophila melanogaster	NTAATTR	YAATTAN	B1H Mathelier et al.(2014) MA0200.1	0.674	0.491
hbn M06291_2.00	Drosophila melanogaster	TWAWTTR	YAAWTWA	B1H Zhu et al.(2011) Hbn_Cell_FBgn0008636	0.674	0.491
hbn M06292_2.00	Drosophila melanogaster	NHTAATTR	YAATTADN	B1H Zhu et al.(2011) Hbn_SOLEXA_FBgn0008636	0.674	0.491
Pph13 M06321_2.00	Drosophila melanogaster	NHTAATTR	YAATTADN	B1H Zhu et al.(2011) Pph13_Cell_FBgn0023489	0.674	0.491
Pph13 M06322_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Zhu et al.(2011) Pph13_SOLEXA_FBgn0023489	0.674	0.491
Arx M10775_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ARX_05	0.674	0.491
Drgx M10774_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PRRXL1_01	0.674	0.491
VSX2 M00285_2.00	Homo sapiens	NDTWTATTHNNN	NNNDAATAWAHN	PBM Barrera et al.(2016) VSX2_R200P	0.674	0.491
VSX2 M00286_2.00	Homo sapiens	YRWKWNN	NNWMWYR	PBM Barrera et al.(2016) VSX2_R200Q	0.674	0.491
ARX M04896_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ARX_eDBD_Methyl-HT-SELEX	0.674	0.491
DRGX M05254_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) DRGX_eDBD_Methyl-HT-SELEX	0.674	0.491
UNCX M05241_2.00	Homo sapiens	NYRRYKNN	NNMRYYRN	SELEX Yin et al.(2017) UNCX_eDBD_Methyl-HT-SELEX	0.674	0.491
ALX3 M05196_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ALX3_eDBD_Methyl-HT-SELEX_1	0.674	0.491
ALX3 M05197_2.00	Homo sapiens	NTAAYBHN	NDVRTTAN	SELEX Yin et al.(2017) ALX3_eDBD_Methyl-HT-SELEX_2	0.674	0.491
ALX3 M05199_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ALX3_FL_Methyl-HT-SELEX_1	0.674	0.491
ALX3 M05200_2.00	Homo sapiens	NTAAYGHN	NDCRTTAN	SELEX Yin et al.(2017) ALX3_FL_Methyl-HT-SELEX_2	0.674	0.491
Alx1 M00471_2.00	Mus musculus	NTAATTRN	NYAATTAN	PBM Berger et al.(2008) Cart1_0997	0.674	0.474
Alx1 M00472_2.00	Mus musculus	NTAATDDN	NHHATTAN	PBM Berger et al.(2008) Cart1_1275	0.674	0.474
Alx4 M00487_2.00	Mus musculus	NTAATDDN	NHHATTAN	PBM Berger et al.(2008) Alx4_1744	0.674	0.474
ALX4 M03079_2.00	Homo sapiens	NTAATYNRRTTAN	NTAAYYNRATTAN	SELEX Jolma et al.(2013) ALX4_1	0.674	0.474
ALX1 M03226_2.00	Homo sapiens	NTAATTRVRTTAN	NTAAYBYAATTAN	SELEX Jolma et al.(2013) CART1_1	0.674	0.474
Alx1 M03272_2.00	Mus musculus	NNTAATTRRD	HYYAATTANN	SELEX Jolma et al.(2013) Alx1_1	0.674	0.474
Alx1 M03273_2.00	Mus musculus	NTAATYNRATTAN	NTAATYNRATTAN	SELEX Jolma et al.(2013) Alx1_2	0.674	0.474
Alx4 M03278_2.00	Mus musculus	NTAATYNRATTAN	NTAATYNRATTAN	SELEX Jolma et al.(2013) Alx4_1	0.674	0.474
CG2808 M03875_2.00	Drosophila melanogaster	TAATYNSRTTA	TAAYSNRATTA	SELEX Nitta et al.(2015) CG2808_1	0.674	0.474
ALX1 M05327_2.00	Homo sapiens	TAATYTAATTA	TAATTARATTA	SELEX Yin et al.(2017) ALX1_FL_HT-SELEX	0.674	0.474
ALX4 M04917_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ALX4_eDBD_HT-SELEX	0.674	0.474
ALX1 M09160_2.00	Homo sapiens	VTAATYRVATTA	TAATBYRATTAB	Misc Kulakovskiy et al.(2013) ALX1_HUMAN.H11MO.0.B	0.674	0.474
Alx1 M09201_2.00	Mus musculus	VTAATYRVATTA	TAATBYRATTAB	Misc Kulakovskiy et al.(2013) ALX1_MOUSE.H11MO.0.B	0.674	0.474
ALX4 M10637_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ALX4_01	0.674	0.474
ALX1 M10741_2.00	Homo sapiens	VVHTAATKNNHATTABYN	NRVTAATDNNMATTADBB	Transfac Matys et al.(2006) V$CART1_01	0.674	0.474
ARX M00260_2.00	Homo sapiens	NMTAATTANNN	NNNTAATTAKN	PBM Barrera et al.(2016) ARX_L343Q	0.674	0.474
ALX1 M05328_2.00	Homo sapiens	TAATYTAATTA	TAATTARATTA	SELEX Yin et al.(2017) ALX1_FL_Methyl-HT-SELEX	0.674	0.474
ALX4 M04918_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ALX4_eDBD_Methyl-HT-SELEX_1	0.674	0.474
ALX4 M04919_2.00	Homo sapiens	NTWAYGHN	NDCRTWAN	SELEX Yin et al.(2017) ALX4_eDBD_Methyl-HT-SELEX_2	0.674	0.474
ARX M00261_2.00	Homo sapiens	NNWRAYNNN	NNNRTYWNN	PBM Barrera et al.(2016) ARX_P353L	0.674	0.474
ARX M00262_2.00	Homo sapiens	ATAATTAT	ATAATTAT	PBM Barrera et al.(2016) ARX_P353R	0.674	0.474
CG11294 M03855_2.00	Drosophila melanogaster	TAATTVVATTA	TAATBBAATTA	SELEX Nitta et al.(2015) CG11294_1	0.673	0.491
CG11294 M03856_2.00	Drosophila melanogaster	TAATTDVATTA	TAATBHAATTA	SELEX Nitta et al.(2015) CG11294_2	0.673	0.491
CG11294 M06531_2.00	Drosophila melanogaster	TAATTAA	TTAATTA	B1H Mathelier et al.(2014) MA0172.1	0.673	0.491
CG11294 M06337_2.00	Drosophila melanogaster	TAATTAA	TTAATTA	B1H Zhu et al.(2011) CG11294_Cell_FBgn0030058	0.673	0.491
CG11294 M06338_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) CG11294_SOLEXA_FBgn0030058	0.673	0.491
NEMVEDRAFT_v1g81309 M02152_2.00	Nematostella vectensis	NTAATDNNN	NNNHATTAN	PBM Weirauch et al.(2014) pTH5477	0.666	0.456
Dlx3 M00387_2.00	Mus musculus	NTAATDRNN	NNYHATTAN	PBM Berger et al.(2008) Dlx3_1030	0.661	0.456
DLX3 M03081_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX3_1	0.661	0.456
DLX3 M04922_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_eDBD_HT-SELEX	0.661	0.456
DLX3 M04925_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX3_FL_HT-SELEX	0.661	0.456
DLX3 M09129_2.00	Homo sapiens	RVTAATTRVH	DBYAATTABY	Misc Kulakovskiy et al.(2013) DLX3_HUMAN.H11MO.0.C	0.661	0.456
Dlx3 M09172_2.00	Mus musculus	RVTAATTRVH	DBYAATTABY	Misc Kulakovskiy et al.(2013) DLX3_MOUSE.H11MO.0.C	0.661	0.456
dlx3.L M10803_2.00	Xenopus laevis	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_02	0.661	0.456
DLX3 M10638_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_Q3	0.661	0.456
DLX3 M10639_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_Q6	0.661	0.456
dlx3.L M10804_2.00	Xenopus laevis	YAWRTAAAYAWWRY	RYWWTRTTTAYWWR	Transfac Matys et al.(2006) V$XFD1_01	0.661	0.456
DLX3 M04923_2.00	Homo sapiens	NTWAYKHB	VDMRTWAN	SELEX Yin et al.(2017) DLX3_eDBD_Methyl-HT-SELEX_1	0.661	0.456
DLX3 M04924_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_eDBD_Methyl-HT-SELEX_2	0.661	0.456
DLX3 M04926_2.00	Homo sapiens	NTWAYGHB	VDCRTWAN	SELEX Yin et al.(2017) DLX3_FL_Methyl-HT-SELEX_1	0.661	0.456
DLX3 M04927_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_FL_Methyl-HT-SELEX_2	0.661	0.456
Otp M00417_2.00	Mus musculus	NNHAATND	HNATTDNN	PBM Berger et al.(2008) Otp_3496	0.658	0.561
HOXA2 M02083_2.00	Homo sapiens	NNNDHHNNN	NNNDDHNNN	PBM Weirauch et al.(2014) pTH5887	0.658	0.456
Hoxa2 M00403_2.00	Mus musculus	NTAATKRNN	NNYMATTAN	PBM Berger et al.(2008) Hoxa2_3079	0.658	0.456
HOXA2 M03097_2.00	Homo sapiens	NBTAATKRNN	NNYMATTAVN	SELEX Jolma et al.(2013) HOXA2_1	0.658	0.456
HOXB2 M03213_2.00	Homo sapiens	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) HOXB2_1	0.658	0.456
Hoxa2 M03251_2.00	Mus musculus	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) Hoxa2_1	0.658	0.456
pb M03872_2.00	Drosophila melanogaster	NTRAYKRY	RYMRTYAN	SELEX Nitta et al.(2015) pb_1	0.658	0.456
HOXA2 M04962_2.00	Homo sapiens	NTAATKRV	BYMATTAN	SELEX Yin et al.(2017) HOXA2_eDBD_HT-SELEX	0.658	0.456
HOXA2 M04965_2.00	Homo sapiens	NTAATKAB	VTMATTAN	SELEX Yin et al.(2017) HOXA2_FL_HT-SELEX	0.658	0.456
HOXB2 M05292_2.00	Homo sapiens	BTAATKRV	BYMATTAV	SELEX Yin et al.(2017) HOXB2_eDBD_HT-SELEX	0.658	0.456
pb M06545_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0238.1	0.658	0.456
pb M06366_2.00	Drosophila melanogaster	BYTAATKA	TMATTARV	B1H Zhu et al.(2011) Pb_Cell_FBgn0051481	0.658	0.456
pb M06367_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) Pb_SOLEXA_FBgn0051481	0.658	0.456
Hoxa2 M09566_2.00	Mus musculus	DTGATKGATKDB	VHMATCMATCAH	Misc Heinz et al.(2010) mES-Hoxa2_Donaldson_et_al.	0.658	0.456
HOXA2 M04963_2.00	Homo sapiens	NTAATTAN	NTAATTAN	SELEX Yin et al.(2017) HOXA2_eDBD_Methyl-HT-SELEX_1	0.658	0.456
HOXA2 M04964_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) HOXA2_eDBD_Methyl-HT-SELEX_2	0.658	0.456
HOXA2 M04966_2.00	Homo sapiens	NTAATKAB	VTMATTAN	SELEX Yin et al.(2017) HOXA2_FL_Methyl-HT-SELEX_1	0.658	0.456
HOXA2 M04967_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) HOXA2_FL_Methyl-HT-SELEX_2	0.658	0.456
HOXB2 M05293_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXB2_eDBD_Methyl-HT-SELEX_1	0.658	0.456
HOXB2 M05294_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) HOXB2_eDBD_Methyl-HT-SELEX_2	0.658	0.456
Isx M00452_2.00	Mus musculus	NNHDATNN	NNATHDNN	PBM Berger et al.(2008) Isx_3445	0.656	0.474
unc-4 M03846_2.00	Drosophila melanogaster	TAATTNAATTA	TAATTNAATTA	SELEX Nitta et al.(2015) unc-4_1	0.655	0.509
unc-4 M06523_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Mathelier et al.(2014) MA0250.1	0.655	0.509
VSX1 M00268_2.00	Homo sapiens	NNWRAYNNN	NNNRTYWNN	PBM Barrera et al.(2016) VSX1_R166Q	0.655	0.509
otp M03834_2.00	Drosophila melanogaster	BTAATTRN	NYAATTAV	SELEX Nitta et al.(2015) otp_1	0.653	0.544
otp M03835_2.00	Drosophila melanogaster	YTAATTRV	BYAATTAR	SELEX Nitta et al.(2015) otp_2	0.653	0.544
otp M06516_2.00	Drosophila melanogaster	YTAATTA	TAATTAR	B1H Mathelier et al.(2014) MA0236.1	0.653	0.544
otp M06309_2.00	Drosophila melanogaster	HYTAATTA	TAATTARD	B1H Zhu et al.(2011) Otp_Cell_FBgn0015524	0.653	0.544
otp M06310_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Zhu et al.(2011) Otp_SOLEXA_FBgn0015524	0.653	0.544
PHOX2B M00279_2.00	Homo sapiens	NVTAATTRMNN	NNKYAATTABN	PBM Barrera et al.(2016) PHOX2B_R100L	0.651	0.491
OdsH M03851_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) OdsH_1	0.651	0.491
OdsH M03852_2.00	Drosophila melanogaster	TAATBNVATTA	TAATBNVATTA	SELEX Nitta et al.(2015) OdsH_2	0.651	0.491
OdsH M06528_2.00	Drosophila melanogaster	BTAATTR	YAATTAV	B1H Mathelier et al.(2014) MA0198.1	0.651	0.491
OdsH M06330_2.00	Drosophila melanogaster	BTAATTR	YAATTAV	B1H Zhu et al.(2011) Odsh_Cell_FBgn0026058	0.651	0.491
OdsH M06331_2.00	Drosophila melanogaster	NHTAATTR	YAATTADN	B1H Zhu et al.(2011) Odsh_SOLEXA_FBgn0026058	0.651	0.491
PHOX2B M00278_2.00	Homo sapiens	NNNNNRY	RYNNNNN	PBM Barrera et al.(2016) PHOX2B_Q143R	0.651	0.491
Dlx4 M00409_2.00	Mus musculus	NWAATNDN	NHNATTWN	PBM Berger et al.(2008) Dlx4_3488	0.649	0.421
DLX4 M03112_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX4_1	0.649	0.421
DLX4 M05002_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX4_eDBD_HT-SELEX	0.649	0.421
DLX4 M05005_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX4_FL_HT-SELEX	0.649	0.421
DLX4 M05003_2.00	Homo sapiens	NTAAYRAB	VTYRTTAN	SELEX Yin et al.(2017) DLX4_eDBD_Methyl-HT-SELEX_1	0.649	0.421
DLX4 M05004_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX4_eDBD_Methyl-HT-SELEX_2	0.649	0.421
DLX4 M05006_2.00	Homo sapiens	NTAAYKAB	VTMRTTAN	SELEX Yin et al.(2017) DLX4_FL_Methyl-HT-SELEX_1	0.649	0.421
DLX4 M05007_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX4_FL_Methyl-HT-SELEX_2	0.649	0.421
Dlx2 M00423_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Dlx2_2273	0.649	0.439
DLX2 M03118_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX2_1	0.649	0.439
Dlx2 M03254_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Dlx2_1	0.649	0.439
DLX2 M05026_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_eDBD_HT-SELEX	0.649	0.439
DLX2 M05028_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_FL_HT-SELEX	0.649	0.439
DLX2 M10674_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX2_Q6	0.649	0.439
DLX2 M05027_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_eDBD_Methyl-HT-SELEX	0.649	0.439
DLX2 M05029_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_FL_Methyl-HT-SELEX	0.649	0.439
Dll M02112_2.00	Drosophila melanogaster	NVTAATTANN	NNTAATTABN	PBM Weirauch et al.(2014) pTH5506	0.648	0.439
Dll M03777_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Dll_1	0.648	0.439
Dll M03778_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Dll_2	0.648	0.439
Dll M06479_2.00	Drosophila melanogaster	TAATTDB	VHAATTA	B1H Mathelier et al.(2014) MA0187.1	0.648	0.439
Dll M06217_2.00	Drosophila melanogaster	TAATTDB	VHAATTA	B1H Zhu et al.(2011) Dll_Cell_FBgn0000157	0.648	0.439
Dll M06218_2.00	Drosophila melanogaster	TAATKR	YMATTA	B1H Zhu et al.(2011) Dll_SOLEXA_FBgn0000157	0.648	0.439
ISX M00319_2.00	Homo sapiens	DTAATTRK	MYAATTAH	PBM Barrera et al.(2016) ISX_REF	0.646	0.456
ISX M03218_2.00	Homo sapiens	NTAATTARATTAN	NTAATYTAATTAN	SELEX Jolma et al.(2013) ISX_1	0.646	0.456
ISX M03219_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Jolma et al.(2013) ISX_2	0.646	0.456
ISX M03220_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) ISX_3	0.646	0.456
ISX M05304_2.00	Homo sapiens	BTAATTRG	CYAATTAV	SELEX Yin et al.(2017) ISX_eDBD_HT-SELEX	0.646	0.456
ISX M05307_2.00	Homo sapiens	YTAATTRS	SYAATTAR	SELEX Yin et al.(2017) ISX_FL_HT-SELEX	0.646	0.456
ISX M05305_2.00	Homo sapiens	NTAATTAG	CTAATTAN	SELEX Yin et al.(2017) ISX_eDBD_Methyl-HT-SELEX_1	0.646	0.456
ISX M05306_2.00	Homo sapiens	HTAAYGHN	NDCRTTAD	SELEX Yin et al.(2017) ISX_eDBD_Methyl-HT-SELEX_2	0.646	0.456
ISX M05308_2.00	Homo sapiens	YTAATTRS	SYAATTAR	SELEX Yin et al.(2017) ISX_FL_Methyl-HT-SELEX_1	0.646	0.456
ISX M05309_2.00	Homo sapiens	HTAAYGHN	NDCRTTAD	SELEX Yin et al.(2017) ISX_FL_Methyl-HT-SELEX_2	0.646	0.456
unpg M03836_2.00	Drosophila melanogaster	SSTAATYRVN	NBYRATTASS	SELEX Nitta et al.(2015) unpg_1	0.645	0.404
unpg M06517_2.00	Drosophila melanogaster	BTAATTR	YAATTAV	B1H Mathelier et al.(2014) MA0251.1	0.645	0.404
unpg M06311_2.00	Drosophila melanogaster	NBTAATTR	YAATTAVN	B1H Zhu et al.(2011) Unpg_Cell_FBgn0015561	0.645	0.404
unpg M06312_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Unpg_SOLEXA_FBgn0015561	0.645	0.404
P79681_ACIBE M02200_2.00	Acipenser baerii	DTAATTRB	VYAATTAH	PBM Weirauch et al.(2014) pTH6156	0.644	0.561
HESX1 M00309_2.00	Homo sapiens	HTAATTRGN	NCYAATTAD	PBM Barrera et al.(2016) HESX1_REF	0.644	0.526
HESX1 M00307_2.00	Homo sapiens	TAATTRNN	NNYAATTA	PBM Barrera et al.(2016) HESX1_N125S	0.644	0.526
HESX1 M00308_2.00	Homo sapiens	NATAHATRN	NYATDTATN	PBM Barrera et al.(2016) HESX1_R160C	0.644	0.509
Mnx1 M00388_2.00	Mus musculus	NTAATBDNNN	NNNHVATTAN	PBM Berger et al.(2008) Hlxb9_3422	0.640	0.421
MNX1 M03143_2.00	Homo sapiens	NHTAATTRNH	DNYAATTADN	SELEX Jolma et al.(2013) MNX1_1	0.640	0.421
exex M03871_2.00	Drosophila melanogaster	NNNNYAATTNNYDN	NHRNNAATTRNNNN	SELEX Nitta et al.(2015) exex_1	0.640	0.421
MNX1 M05126_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MNX1_eDBD_HT-SELEX	0.640	0.421
exex M06544_2.00	Drosophila melanogaster	BTAATTA	TAATTAV	B1H Mathelier et al.(2014) MA0224.1	0.640	0.421
exex M06364_2.00	Drosophila melanogaster	TAATTAV	BTAATTA	B1H Zhu et al.(2011) Exex_Cell_FBgn0041156	0.640	0.421
exex M06365_2.00	Drosophila melanogaster	TAATBR	YVATTA	B1H Zhu et al.(2011) Exex_SOLEXA_FBgn0041156	0.640	0.421
MNX1 M05127_2.00	Homo sapiens	HTAAYGHB	VDCRTTAD	SELEX Yin et al.(2017) MNX1_eDBD_Methyl-HT-SELEX_1	0.640	0.421
MNX1 M05128_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MNX1_eDBD_Methyl-HT-SELEX_2	0.640	0.421
Gbx2 M00462_2.00	Mus musculus	NNDAHNN	NNDTHNN	PBM Berger et al.(2008) Gbx2_3110	0.640	0.386
Gbx1 M00525_2.00	Mus musculus	NNTAATNR	YNATTANN	PBM Berger et al.(2008) Gbx1_2883	0.640	0.386
GBX1 M03193_2.00	Homo sapiens	NBTAATTRSB	VSYAATTAVN	SELEX Jolma et al.(2013) GBX1_1	0.640	0.386
GBX2 M03201_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_1	0.640	0.386
GBX2 M03202_2.00	Homo sapiens	TAATTRVBCAATWA	TWATTGVBYAATTA	SELEX Jolma et al.(2013) GBX2_2	0.640	0.386
GBX2 M03203_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_3	0.640	0.386
Gbx1 M03286_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx1_1	0.640	0.386
Gbx2 M03268_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx2_1	0.640	0.386
GBX2 M05265_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_HT-SELEX	0.640	0.386
GBX2 M05268_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) GBX2_FL_HT-SELEX	0.640	0.386
GBX2 M05266_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_1	0.640	0.386
GBX2 M05267_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_2	0.640	0.386
GBX2 M05269_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_1	0.640	0.386
GBX2 M05270_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_2	0.640	0.386
Vsx2 M02130_2.00	Drosophila melanogaster	TTAATTAB	VTAATTAA	PBM Weirauch et al.(2014) pTH6195	0.640	0.474
Vsx2 M03880_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Vsx2_1	0.640	0.474
Vsx2 M03881_2.00	Drosophila melanogaster	HRAYNVNNTRATKD	HMATYANNBNRTYD	SELEX Nitta et al.(2015) Vsx2_2	0.640	0.474
Vsx2 M06553_2.00	Drosophila melanogaster	KTTAATTAG	CTAATTAAM	B1H Mathelier et al.(2014) MA0180.1	0.640	0.474
Vsx2 M06382_2.00	Drosophila melanogaster	KTTAATTAG	CTAATTAAM	B1H Zhu et al.(2011) CG33980_Cell_FBgn0053980	0.640	0.474
Vsx2 M06383_2.00	Drosophila melanogaster	NNTAATTRRN	NYYAATTANN	B1H Zhu et al.(2011) CG33980_SOLEXA_2_0_FBgn0053980	0.640	0.474
Vsx2 M06384_2.00	Drosophila melanogaster	NNTAATKDN	NHMATTANN	B1H Zhu et al.(2011) CG33980_SOLEXA_2_10_FBgn0053980	0.640	0.474
Vsx2 M06385_2.00	Drosophila melanogaster	NHTAATTR	YAATTADN	B1H Zhu et al.(2011) CG33980_SOLEXA_FBgn0053980	0.640	0.474
ESX1 M00291_2.00	Homo sapiens	NNTRATNRN	NYNATYANN	PBM Barrera et al.(2016) ESX1_K193R	0.640	0.491
Dlx5 M00449_2.00	Mus musculus	WRATNDN	NHNATYW	PBM Berger et al.(2008) Dlx5_3419	0.639	0.421
DLX5 M03095_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX5_1	0.639	0.421
DLX5 M04953_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX5_eDBD_HT-SELEX	0.639	0.421
DLX5 M04956_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX5_FL_HT-SELEX	0.639	0.421
Dlx5 M09195_2.00	Mus musculus	WAATTRYWKBB	VVMWRYAATTW	Misc Kulakovskiy et al.(2013) DLX5_MOUSE.H11MO.0.C	0.639	0.421
DLX5 M10650_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX5_Q3	0.639	0.421
DLX5 M04954_2.00	Homo sapiens	NTAAYDAB	VTHRTTAN	SELEX Yin et al.(2017) DLX5_eDBD_Methyl-HT-SELEX_1	0.639	0.421
DLX5 M04955_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX5_eDBD_Methyl-HT-SELEX_2	0.639	0.421
DLX5 M04957_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) DLX5_FL_Methyl-HT-SELEX_1	0.639	0.421
DLX5 M04958_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX5_FL_Methyl-HT-SELEX_2	0.639	0.421
ENSCING00000016045 M02078_2.00	Ciona intestinalis	NNYTAATTRGN	NCYAATTARNN	PBM Weirauch et al.(2014) pTH6551	0.638	0.526
Dlx1 M00491_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Dlx1_1741	0.638	0.404
DLX1 M03166_2.00	Homo sapiens	NNTAATTDNN	NNHAATTANN	SELEX Jolma et al.(2013) DLX1_1	0.638	0.404
DLX6 M03078_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX6_1	0.638	0.404
Dlx1 M03281_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Dlx1_1	0.638	0.404
DLX1 M05176_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX1_eDBD_HT-SELEX	0.638	0.404
DLX1 M05178_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX1_FL_HT-SELEX	0.638	0.404
DLX6 M04905_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX6_eDBD_HT-SELEX	0.638	0.404
DLX1 M05177_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX1_eDBD_Methyl-HT-SELEX	0.638	0.404
DLX1 M05179_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX1_FL_Methyl-HT-SELEX	0.638	0.404
DLX6 M04906_2.00	Homo sapiens	NTAAYKAB	VTMRTTAN	SELEX Yin et al.(2017) DLX6_eDBD_Methyl-HT-SELEX_1	0.638	0.404
DLX6 M04907_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX6_eDBD_Methyl-HT-SELEX_2	0.638	0.404
EMX1 M02088_2.00	Homo sapiens	NNTAATKANN	NNTMATTANN	PBM Weirauch et al.(2014) pTH5677	0.635	0.491
EMX1 M03151_2.00	Homo sapiens	NBTAATTRNN	NNYAATTAVN	SELEX Jolma et al.(2013) EMX1_1	0.635	0.491
EMX1 M03152_2.00	Homo sapiens	YMATTARYTAATKR	YMATTARYTAATKR	SELEX Jolma et al.(2013) EMX1_2	0.635	0.491
EMX1 M05145_2.00	Homo sapiens	BTAATTAN	NTAATTAV	SELEX Yin et al.(2017) EMX1_eDBD_HT-SELEX	0.635	0.491
EMX1 M05147_2.00	Homo sapiens	BTAATTAV	BTAATTAV	SELEX Yin et al.(2017) EMX1_FL_HT-SELEX	0.635	0.491
EMX1 M05146_2.00	Homo sapiens	BTAATTRN	NYAATTAV	SELEX Yin et al.(2017) EMX1_eDBD_Methyl-HT-SELEX	0.635	0.491
EMX1 M05148_2.00	Homo sapiens	BTAATTAN	NTAATTAV	SELEX Yin et al.(2017) EMX1_FL_Methyl-HT-SELEX	0.635	0.491
Emx2 M00495_2.00	Mus musculus	NTAATDDNN	NNHHATTAN	PBM Berger et al.(2008) Emx2_3420	0.635	0.474
ems M02114_2.00	Drosophila melanogaster	NTAATKRNB	VNYMATTAN	PBM Weirauch et al.(2014) pTH5673	0.635	0.474
EMX2 M03210_2.00	Homo sapiens	NBTAATTANN	NNTAATTAVN	SELEX Jolma et al.(2013) EMX2_1	0.635	0.474
EMX2 M03211_2.00	Homo sapiens	YMATTARBTAATKR	YMATTAVYTAATKR	SELEX Jolma et al.(2013) EMX2_2	0.635	0.474
ems M03789_2.00	Drosophila melanogaster	BTAATTAN	NTAATTAV	SELEX Nitta et al.(2015) ems_1	0.635	0.474
ems M03790_2.00	Drosophila melanogaster	BTAATTAVBVBTAATKRN	NYMATTAVBVBTAATTAV	SELEX Nitta et al.(2015) ems_2	0.635	0.474
ems M03791_2.00	Drosophila melanogaster	BTAATKRN	NYMATTAV	SELEX Nitta et al.(2015) ems_3	0.635	0.474
ems M03792_2.00	Drosophila melanogaster	STAATKRSSSSTAATKRV	BYMATTASSSSYMATTAS	SELEX Nitta et al.(2015) ems_4	0.635	0.474
EMX2 M05281_2.00	Homo sapiens	YTAATKAB	VTMATTAR	SELEX Yin et al.(2017) EMX2_eDBD_HT-SELEX	0.635	0.474
ems M06484_2.00	Drosophila melanogaster	HTAATKR	YMATTAD	B1H Mathelier et al.(2014) MA0219.1	0.635	0.474
ems M06233_2.00	Drosophila melanogaster	WHTAATKR	YMATTADW	B1H Zhu et al.(2011) Ems_Cell_FBgn0000576	0.635	0.474
ems M06234_2.00	Drosophila melanogaster	TSTMATHM	KDATKASA	B1H Zhu et al.(2011) ems_FlyReg_FBgn0000576	0.635	0.474
ems M06235_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) Ems_SOLEXA_FBgn0000576	0.635	0.474
ems M09676_2.00	Drosophila melanogaster	WTWATGA	TCATWAW	Misc Kulakovskiy et al.(2009) ems	0.635	0.474
EMX2 M05282_2.00	Homo sapiens	YTAATKAN	NTMATTAR	SELEX Yin et al.(2017) EMX2_eDBD_Methyl-HT-SELEX	0.635	0.474
E5 M03814_2.00	Drosophila melanogaster	STAATKNN	NNMATTAS	SELEX Nitta et al.(2015) E5_1	0.635	0.456
E5 M06507_2.00	Drosophila melanogaster	BTAATKA	TMATTAV	B1H Mathelier et al.(2014) MA0189.1	0.635	0.456
E5 M06293_2.00	Drosophila melanogaster	NBTAATKA	TMATTAVN	B1H Zhu et al.(2011) E5_Cell_FBgn0008646	0.635	0.456
E5 M06294_2.00	Drosophila melanogaster	NTAATDR	YHATTAN	B1H Zhu et al.(2011) E5_SOLEXA_FBgn0008646	0.635	0.456
MSX2 M00290_2.00	Homo sapiens	WDATNDNN	NNHNATHW	PBM Barrera et al.(2016) MSX2_REF	0.633	0.439
Msx2 M00414_2.00	Mus musculus	HRATKRNN	NNYMATYD	PBM Berger et al.(2008) Msx2_3449	0.633	0.439
MSX2 M03127_2.00	Homo sapiens	TAATTRBHWKWTAATTGV	BCAATTAWMWDVYAATTA	SELEX Jolma et al.(2013) MSX2_1	0.633	0.439
MSX2 M03128_2.00	Homo sapiens	NTAATTGB	VCAATTAN	SELEX Jolma et al.(2013) MSX2_2	0.633	0.439
MSX2 M05060_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX2_eDBD_HT-SELEX	0.633	0.439
MSX2 M10677_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX2_Q3	0.633	0.439
MSX2 M10678_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX2_Q6	0.633	0.439
MSX2 M00288_2.00	Homo sapiens	NTAATNDN	NHNATTAN	PBM Barrera et al.(2016) MSX2_P148H	0.633	0.439
MSX2 M05061_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX2_eDBD_Methyl-HT-SELEX_1	0.633	0.439
MSX2 M05062_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) MSX2_eDBD_Methyl-HT-SELEX_2	0.633	0.439
Msx1 M00501_2.00	Mus musculus	NHDATND	HNATHDN	PBM Berger et al.(2008) Msx1_3031	0.633	0.421
Dr M00555_2.00	Drosophila melanogaster	TAATTRNN	NNYAATTA	PBM Busser et al.(2012a) Msh	0.633	0.421
MSX1 M03184_2.00	Homo sapiens	TAATTRBHHNHTAATTRN	NYAATTADNDDVYAATTA	SELEX Jolma et al.(2013) MSX1_1	0.633	0.421
MSX1 M03185_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) MSX1_2	0.633	0.421
MSX1 M03186_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) MSX1_3	0.633	0.421
MSX1 M05221_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) MSX1_eDBD_HT-SELEX	0.633	0.421
MSX1 M05224_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_FL_HT-SELEX	0.633	0.421
Dr M06482_2.00	Drosophila melanogaster	TAATTGS	SCAATTA	B1H Mathelier et al.(2014) MA0188.1	0.633	0.421
Dr M06229_2.00	Drosophila melanogaster	TAATTGSHB	VDSCAATTA	B1H Zhu et al.(2011) Dr_Cell_FBgn0000492	0.633	0.421
Dr M06230_2.00	Drosophila melanogaster	TAATTR	YAATTA	B1H Zhu et al.(2011) Dr_SOLEXA_FBgn0000492	0.633	0.421
MSX1 M10715_2.00	Homo sapiens	HNBTWWNTG	CANWWAVND	Transfac Matys et al.(2006) V$MSX1_01	0.633	0.421
MSX1 M10716_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX1_Q5_01	0.633	0.421
MSX1 M10717_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX1_Q5	0.633	0.421
MSX1 M05222_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_eDBD_Methyl-HT-SELEX_1	0.633	0.421
MSX1 M05223_2.00	Homo sapiens	NTWAYGMB	VKCRTWAN	SELEX Yin et al.(2017) MSX1_eDBD_Methyl-HT-SELEX_2	0.633	0.421
MSX1 M05225_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_FL_Methyl-HT-SELEX_1	0.633	0.421
MSX1 M05226_2.00	Homo sapiens	NTWAYGWB	VWCRTWAN	SELEX Yin et al.(2017) MSX1_FL_Methyl-HT-SELEX_2	0.633	0.421
KLLA0_D10043g M02140_2.00	Kluyveromyces lactis	NNNNWWNNNN	NNNNWWNNNN	PBM Weirauch et al.(2014) pTH6070	0.633	0.368
Msx3 M00429_2.00	Mus musculus	TAATKDNN	NNHMATTA	PBM Berger et al.(2008) Msx3_3206	0.632	0.404
Msx3 M03255_2.00	Mus musculus	TAATTGSHHNNTAATTRN	NYAATTANNDDSCAATTA	SELEX Jolma et al.(2013) Msx3_1	0.632	0.404
Msx3 M03256_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Msx3_2	0.632	0.404
NEMVEDRAFT_v1g8907 M02154_2.00	Nematostella vectensis	NTAATDRNNN	NNNYHATTAN	PBM Weirauch et al.(2014) pTH6483	0.631	0.386
Lhx4 M00430_2.00	Mus musculus	NYAATHN	NDATTRN	PBM Berger et al.(2008) Lhx4_1719	0.630	0.404
Lhx3 M00435_2.00	Mus musculus	NNNYAATHW	WDATTRNNN	PBM Berger et al.(2008) Lhx3_3431	0.630	0.404
Lim3 M02116_2.00	Drosophila melanogaster	NNNNNATBRN	NYVATNNNNN	PBM Weirauch et al.(2014) pTH6478	0.630	0.404
Lhx4 M03257_2.00	Mus musculus	BTAATTRN	NYAATTAV	SELEX Jolma et al.(2013) Lhx4_1	0.630	0.404
Lim3 M03796_2.00	Drosophila melanogaster	BTAATTAV	BTAATTAV	SELEX Nitta et al.(2015) Lim3_1	0.630	0.404
LHX4 M05063_2.00	Homo sapiens	BYAATYRV	BYRATTRV	SELEX Yin et al.(2017) LHX4_eDBD_HT-SELEX	0.630	0.404
LHX4 M05066_2.00	Homo sapiens	BTAATTAN	NTAATTAV	SELEX Yin et al.(2017) LHX4_FL_HT-SELEX	0.630	0.404
Lim3 M06492_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Mathelier et al.(2014) MA0195.1	0.630	0.404
Lim3 M06258_2.00	Drosophila melanogaster	HHTAATKA	TMATTADD	B1H Zhu et al.(2011) Lim3_Cell_FBgn0002023	0.630	0.404
Lim3 M06259_2.00	Drosophila melanogaster	HTRATTR	YAATYAD	B1H Zhu et al.(2011) Lim3_SOLEXA_FBgn0002023	0.630	0.404
Lhx3 M02687_2.00	Mus musculus	VRWTAATTAATTW	WAATTAATTAWYB	SELEX Mathelier et al.(2014) MA0135.1	0.630	0.404
LHX3 M09137_2.00	Homo sapiens	NYTAATTAAWTHH	DDAWTTAATTARN	Misc Kulakovskiy et al.(2013) LHX3_HUMAN.H11MO.0.C	0.630	0.404
Lhx3 M09188_2.00	Mus musculus	NYTRATKRV	BYMATYARN	Misc Kulakovskiy et al.(2013) LHX3_MOUSE.H11MO.0.C	0.630	0.404
Lhx3 M09570_2.00	Mus musculus	NNBTAATTAV	BTAATTAVNN	Misc Heinz et al.(2010) Neuron-Lhx3_GSE31456	0.630	0.404
LHX3 M10657_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LHX3A_01	0.630	0.404
LHX3 M10658_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LHX3b_01	0.630	0.404
LHX3 M10659_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LHX3_Q3	0.630	0.404
LHX4 M05064_2.00	Homo sapiens	BYAATTRV	BYAATTRV	SELEX Yin et al.(2017) LHX4_eDBD_Methyl-HT-SELEX_1	0.630	0.404
LHX4 M05065_2.00	Homo sapiens	NTWAYGHN	NDCRTWAN	SELEX Yin et al.(2017) LHX4_eDBD_Methyl-HT-SELEX_2	0.630	0.404
LHX4 M05067_2.00	Homo sapiens	NYAATTRN	NYAATTRN	SELEX Yin et al.(2017) LHX4_FL_Methyl-HT-SELEX_1	0.630	0.404
LHX4 M05068_2.00	Homo sapiens	NTAAYGHN	NDCRTTAN	SELEX Yin et al.(2017) LHX4_FL_Methyl-HT-SELEX_2	0.630	0.404
ceh-23 M00671_2.00	Caenorhabditis elegans	HTAATTRNNN	NNNYAATTAD	PBM Narasimhan et al.(2015) pTH9478	0.630	0.456
SNAPOd2T00006620001 M02231_2.00	Oikopleura dioica	NTAATTRN	NYAATTAN	PBM Weirauch et al.(2014) pTH5666	0.630	0.474
Q4RRY4_TETNG M02169_2.00	Tetraodon nigroviridis	NNYAATYAN	NTRATTRNN	PBM Weirauch et al.(2014) pTH6326	0.630	0.544
C4B866_NEMVE M02052_2.00	Nematostella vectensis	NNTTAATTARNN	NNYTAATTAANN	PBM Weirauch et al.(2014) pTH6176	0.628	0.404
Nkx1-2 M00503_2.00	Mus musculus	NNTAAWNDN	NHNWTTANN	PBM Berger et al.(2008) Nkx1-2_3214	0.628	0.421
CG11085 M03857_2.00	Drosophila melanogaster	BTAAWYGN	NCRWTTAV	SELEX Nitta et al.(2015) CG11085_1	0.628	0.404
CG11085 M03858_2.00	Drosophila melanogaster	NTAAWCGN	NCGWTTAN	SELEX Nitta et al.(2015) CG11085_2	0.628	0.404
CG11085 M06532_2.00	Drosophila melanogaster	TTAATDG	CHATTAA	B1H Mathelier et al.(2014) MA0171.1	0.628	0.404
CG11085 M06339_2.00	Drosophila melanogaster	NTTAATDGV	BCHATTAAN	B1H Zhu et al.(2011) CG11085_Cell_FBgn0030408	0.628	0.404
CG11085 M06340_2.00	Drosophila melanogaster	NHTAAWBRNN	NNYVWTTADN	B1H Zhu et al.(2011) CG11085_SOLEXA_FBgn0030408	0.628	0.404
Vsx1 M02129_2.00	Drosophila melanogaster	VTTAATTRR	YYAATTAAB	PBM Weirauch et al.(2014) pTH5821	0.628	0.474
Vsx1 M03879_2.00	Drosophila melanogaster	NTAATTRV	BYAATTAN	SELEX Nitta et al.(2015) Vsx1_1	0.628	0.474
Vsx1 M06552_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Mathelier et al.(2014) MA0181.1	0.628	0.474
Vsx1 M06380_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Zhu et al.(2011) CG4136_Cell_FBgn0029775	0.628	0.474
Vsx1 M06381_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) CG4136_SOLEXA_FBgn0029775	0.628	0.474
Nkx1-1 M00442_2.00	Mus musculus	NNTAATNDNN	NNHNATTANN	PBM Berger et al.(2008) Nkx1-1_3856	0.627	0.404
VAX2 M00283_2.00	Homo sapiens	NNTAAWNDNN	NNHNWTTANN	PBM Barrera et al.(2016) VAX2_L139M	0.627	0.439
btn M03832_2.00	Drosophila melanogaster	NNTAATKANB	VNTMATTANN	SELEX Nitta et al.(2015) btn_1	0.626	0.439
btn M03833_2.00	Drosophila melanogaster	VNTAATKABN	NVTMATTANB	SELEX Nitta et al.(2015) btn_2	0.626	0.439
btn M06515_2.00	Drosophila melanogaster	DTAATKA	TMATTAH	B1H Mathelier et al.(2014) MA0215.1	0.626	0.439
btn M06307_2.00	Drosophila melanogaster	NDTAATKA	TMATTAHN	B1H Zhu et al.(2011) Btn_Cell_FBgn0014949	0.626	0.439
btn M06308_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Zhu et al.(2011) Btn_SOLEXA_FBgn0014949	0.626	0.439
Meox1 M00384_2.00	Mus musculus	NTRATKRNN	NNYMATYAN	PBM Berger et al.(2008) Meox1_2310	0.626	0.404
MEOX1 M03077_2.00	Homo sapiens	NNTAATTASN	NSTAATTANN	SELEX Jolma et al.(2013) MEOX1_1	0.626	0.404
MEOX1 M04901_2.00	Homo sapiens	NTDAYGHB	VDCRTHAN	SELEX Yin et al.(2017) MEOX1_FL_HT-SELEX_1	0.626	0.404
MEOX1 M04902_2.00	Homo sapiens	NTMATKRN	NYMATKAN	SELEX Yin et al.(2017) MEOX1_FL_HT-SELEX_2	0.626	0.404
MEOX1 M04903_2.00	Homo sapiens	NTAAYGWB	VWCRTTAN	SELEX Yin et al.(2017) MEOX1_FL_Methyl-HT-SELEX_1	0.626	0.404
MEOX1 M04904_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) MEOX1_FL_Methyl-HT-SELEX_2	0.626	0.404
MSX2 M00289_2.00	Homo sapiens	WDATWDNN	NNHWATHW	PBM Barrera et al.(2016) MSX2_R172H	0.625	0.421
HESX1 M00306_2.00	Homo sapiens	WRATDRNN	NNYHATYW	PBM Barrera et al.(2016) HESX1_E149K	0.624	0.509
slou M00557_2.00	Drosophila melanogaster	NNTAATDRN	NYHATTANN	PBM Busser et al.(2012a) Slou	0.623	0.386
slou M03798_2.00	Drosophila melanogaster	VBTAATTRSB	VSYAATTAVB	SELEX Nitta et al.(2015) slou_1	0.623	0.386
slou M06494_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Mathelier et al.(2014) MA0245.1	0.623	0.386
slou M06262_2.00	Drosophila melanogaster	BYTAATKR	YMATTARV	B1H Zhu et al.(2011) Slou_Cell_FBgn0002941	0.623	0.386
slou M06263_2.00	Drosophila melanogaster	HTAATKR	YMATTAD	B1H Zhu et al.(2011) Slou_SOLEXA_FBgn0002941	0.623	0.386
LHX2 M02085_2.00	Homo sapiens	NNNYAAHDDN	NHHDTTRNNN	PBM Weirauch et al.(2014) pTH5812	0.622	0.386
Lhx2 M00380_2.00	Mus musculus	NTAATKRN	NYMATTAN	PBM Berger et al.(2008) Lhx2_0953	0.622	0.386
Lhx9 M00406_2.00	Mus musculus	NTAATDRN	NYHATTAN	PBM Berger et al.(2008) Lhx9_3492	0.622	0.386
LHX2 M03106_2.00	Homo sapiens	NNTAATTAGN	NCTAATTANN	SELEX Jolma et al.(2013) LHX2_1	0.622	0.386
LHX2 M03107_2.00	Homo sapiens	YAATTANVCTAATTR	YAATTAGBNTAATTR	SELEX Jolma et al.(2013) LHX2_2	0.622	0.386
LHX9 M03163_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) LHX9_1	0.622	0.386
LHX9 M03164_2.00	Homo sapiens	TAATTRGYMATTA	TAATKRCYAATTA	SELEX Jolma et al.(2013) LHX9_2	0.622	0.386
LHX9 M05170_2.00	Homo sapiens	YTAATTRG	CYAATTAR	SELEX Yin et al.(2017) LHX9_eDBD_HT-SELEX	0.622	0.386
LHX9 M05173_2.00	Homo sapiens	NTAATTRG	CYAATTAN	SELEX Yin et al.(2017) LHX9_FL_HT-SELEX	0.622	0.386
LHX2 M09136_2.00	Homo sapiens	NBYTAATTRVNB	VNBYAATTARVN	Misc Kulakovskiy et al.(2013) LHX2_HUMAN.H11MO.0.A	0.622	0.386
Lhx2 M09169_2.00	Mus musculus	NNTAATKRGN	NCYMATTANN	Misc Kulakovskiy et al.(2013) LHX2_MOUSE.H11MO.0.A	0.622	0.386
Lhx2 M09562_2.00	Mus musculus	NYTAATTA	TAATTARN	Misc Heinz et al.(2010) HFSC-Lhx2_GSE48068	0.622	0.386
LHX2 M10655_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LHX2_Q4	0.622	0.386
LHX2 M10656_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LHX2_Q6	0.622	0.386
LHX9 M05171_2.00	Homo sapiens	YTAATTRS	SYAATTAR	SELEX Yin et al.(2017) LHX9_eDBD_Methyl-HT-SELEX_1	0.622	0.386
LHX9 M05172_2.00	Homo sapiens	HTAACGAB	VTCGTTAD	SELEX Yin et al.(2017) LHX9_eDBD_Methyl-HT-SELEX_2	0.622	0.386
LHX9 M05174_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) LHX9_FL_Methyl-HT-SELEX_1	0.622	0.386
LHX9 M05175_2.00	Homo sapiens	HTAACGAB	VTCGTTAD	SELEX Yin et al.(2017) LHX9_FL_Methyl-HT-SELEX_2	0.622	0.386
VAX2 M00284_2.00	Homo sapiens	NNTAATND	HNATTANN	PBM Barrera et al.(2016) VAX2_REF	0.621	0.421
Vax1 M00398_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Vax1_3499	0.621	0.421
Vax2 M00464_2.00	Mus musculus	NTAATDDNN	NNHHATTAN	PBM Berger et al.(2008) Vax2_3500	0.621	0.421
VAX2 M03119_2.00	Homo sapiens	YTAATKAN	NTMATTAR	SELEX Jolma et al.(2013) VAX2_1	0.621	0.421
VAX2 M05030_2.00	Homo sapiens	BTAATTRV	BYAATTAV	SELEX Yin et al.(2017) VAX2_FL_HT-SELEX	0.621	0.421
Vax1 M10764_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$VAX1_04	0.621	0.421
VAX2 M05031_2.00	Homo sapiens	BTAATTRV	BYAATTAV	SELEX Yin et al.(2017) VAX2_FL_Methyl-HT-SELEX	0.621	0.421
ap M06478_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0209.1	0.620	0.386
ap M06214_2.00	Drosophila melanogaster	VYTAATKA	TMATTARB	B1H Zhu et al.(2011) Ap_Cell_FBgn0000099	0.620	0.386
ap M06215_2.00	Drosophila melanogaster	BAATHA	TDATTV	B1H Zhu et al.(2011) ap_FlyReg_FBgn0000099	0.620	0.386
ap M06216_2.00	Drosophila melanogaster	HTAATKR	YMATTAD	B1H Zhu et al.(2011) Ap_SOLEXA_FBgn0000099	0.620	0.386
ap M10781_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$AP_Q6	0.620	0.386
Evx2 M00393_2.00	Mus musculus	NNTAAYNN	NNRTTANN	PBM Berger et al.(2008) Evx2_2645	0.619	0.474
Evx1 M00395_2.00	Mus musculus	NTAATBDNN	NNHVATTAN	PBM Berger et al.(2008) Evx1_3952	0.619	0.474
EVX1 M03102_2.00	Homo sapiens	NNTAATBRBN	NVYVATTANN	SELEX Jolma et al.(2013) EVX1_1	0.619	0.474
EVX2 M03215_2.00	Homo sapiens	NNTAATBRBN	NVYVATTANN	SELEX Jolma et al.(2013) EVX2_1	0.619	0.474
EVX1 M04985_2.00	Homo sapiens	VTAATKAB	VTMATTAB	SELEX Yin et al.(2017) EVX1_eDBD_HT-SELEX	0.619	0.474
EVX2 M05295_2.00	Homo sapiens	NTAATKAN	NTMATTAN	SELEX Yin et al.(2017) EVX2_eDBD_HT-SELEX	0.619	0.474
EVX2 M09158_2.00	Homo sapiens	NBTTTATKRCHNN	NNDGYMATAAAVN	Misc Kulakovskiy et al.(2013) EVX2_HUMAN.H11MO.0.A	0.619	0.474
Evx1 M09174_2.00	Mus musculus	WGATTTATDRBHN	NDVYHATAAATCW	Misc Kulakovskiy et al.(2013) EVX1_MOUSE.H11MO.0.C	0.619	0.474
Evx2 M09173_2.00	Mus musculus	BTTTATKRCHBN	NVDGYMATAAAV	Misc Kulakovskiy et al.(2013) EVX2_MOUSE.H11MO.0.A	0.619	0.474
EVX2 M10736_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EVX2_04	0.619	0.474
EVX1 M04986_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) EVX1_eDBD_Methyl-HT-SELEX_1	0.619	0.474
EVX1 M04987_2.00	Homo sapiens	HTWAYGAB	VTCRTWAD	SELEX Yin et al.(2017) EVX1_eDBD_Methyl-HT-SELEX_2	0.619	0.474
EVX2 M05296_2.00	Homo sapiens	NTAATKAN	NTMATTAN	SELEX Yin et al.(2017) EVX2_eDBD_Methyl-HT-SELEX_1	0.619	0.474
EVX2 M05297_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) EVX2_eDBD_Methyl-HT-SELEX_2	0.619	0.474
vab-7 M02186_2.00	Caenorhabditis elegans	KTAATTAK	MTAATTAM	PBM Weirauch et al.(2014) pTH6104	0.618	0.474
NEMVEDRAFT_v1g205636 M02150_2.00	Nematostella vectensis	NTAATTAN	NTAATTAN	PBM Weirauch et al.(2014) pTH5491	0.615	0.456
ISX M00318_2.00	Homo sapiens	DTAATTRK	MYAATTAH	PBM Barrera et al.(2016) ISX_R83Q	0.615	0.439
CG18599 M06539_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Mathelier et al.(2014) MA0177.1	0.613	0.386
CG18599 M06354_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Zhu et al.(2011) CG18599_Cell_FBgn0038592	0.613	0.386
CG18599 M06355_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) CG18599_SOLEXA_FBgn0038592	0.613	0.386
repo M03826_2.00	Drosophila melanogaster	VTTAATTARB	VYTAATTAAB	SELEX Nitta et al.(2015) repo_1	0.610	0.474
repo M03827_2.00	Drosophila melanogaster	VKYAATTRRN	NYYAATTRMB	SELEX Nitta et al.(2015) repo_2	0.610	0.474
repo M03828_2.00	Drosophila melanogaster	VBYAATTRVNNBYAATTRVB	VBYAATTRVNNBYAATTRVB	SELEX Nitta et al.(2015) repo_3	0.610	0.474
repo M06511_2.00	Drosophila melanogaster	TTAATTA	TAATTAA	B1H Mathelier et al.(2014) MA0240.1	0.610	0.474
repo M06301_2.00	Drosophila melanogaster	DTTAATTA	TAATTAAH	B1H Zhu et al.(2011) Repo_Cell_FBgn0011701	0.610	0.474
repo M06302_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Zhu et al.(2011) Repo_SOLEXA_FBgn0011701	0.610	0.474
bsh M02113_2.00	Drosophila melanogaster	NNTAAYBDNN	NNHVRTTANN	PBM Weirauch et al.(2014) pTH6569	0.605	0.439
bsh M03786_2.00	Drosophila melanogaster	TAATYTAATTA	TAATTARATTA	SELEX Nitta et al.(2015) bsh_1	0.605	0.439
bsh M03787_2.00	Drosophila melanogaster	TAATTRVWTAATKR	YMATTAWBYAATTA	SELEX Nitta et al.(2015) bsh_2	0.605	0.439
bsh M03788_2.00	Drosophila melanogaster	NTAATBRN	NYVATTAN	SELEX Nitta et al.(2015) bsh_3	0.605	0.439
bsh M06483_2.00	Drosophila melanogaster	YTAATBR	YVATTAR	B1H Mathelier et al.(2014) MA0214.1	0.605	0.439
bsh M06231_2.00	Drosophila melanogaster	HYTAATBRV	BYVATTARD	B1H Zhu et al.(2011) Bsh_Cell_FBgn0000529	0.605	0.439
bsh M06232_2.00	Drosophila melanogaster	NTAATKR	YMATTAN	B1H Zhu et al.(2011) Bsh_SOLEXA_FBgn0000529	0.605	0.439
ceh-62 M02187_2.00	Caenorhabditis elegans	NNYAATTRNN	NNYAATTRNN	PBM Weirauch et al.(2014) pTH5492	0.604	0.421
ventx3.2 M02232_2.00	Xenopus tropicalis	ATTAATTA	TAATTAAT	PBM Weirauch et al.(2014) pTH6291	0.604	0.386
ventx1.2.S M10805_2.00	Xenopus laevis	RSRMAAATWBBVS	SBBBWATTTKYSY	Transfac Matys et al.(2006) V$XVENT1_01	0.604	0.421
ceh-5 M02179_2.00	Caenorhabditis elegans	NNTAATDDN	NHHATTANN	PBM Weirauch et al.(2014) pTH6562	0.604	0.404
Bsx M00516_2.00	Mus musculus	NTAAYBDNN	NNHVRTTAN	PBM Berger et al.(2008) Bsx_3483	0.603	0.439
BSX M03235_2.00	Homo sapiens	NTAATBRN	NYVATTAN	SELEX Jolma et al.(2013) BSX_1	0.603	0.439
BSX M05377_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) BSX_eDBD_HT-SELEX_1	0.603	0.439
BSX M05378_2.00	Homo sapiens	BTAATBRV	BYVATTAV	SELEX Yin et al.(2017) BSX_eDBD_HT-SELEX_2	0.603	0.439
BSX M05379_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) BSX_eDBD_Methyl-HT-SELEX_1	0.603	0.439
BSX M05380_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) BSX_eDBD_Methyl-HT-SELEX_2	0.603	0.439
NOTO M03241_2.00	Homo sapiens	NNTAATKWRN	NYWMATTANN	SELEX Jolma et al.(2013) NOTO_1	0.603	0.351
NOTO M05390_2.00	Homo sapiens	BTAATKRV	BYMATTAV	SELEX Yin et al.(2017) NOTO_eDBD_HT-SELEX	0.603	0.351
NOTO M05391_2.00	Homo sapiens	BTMATKRV	BYMATKAV	SELEX Yin et al.(2017) NOTO_eDBD_Methyl-HT-SELEX	0.603	0.351
Barx1 M00413_2.00	Mus musculus	NNTAAYBDNN	NNHVRTTANN	PBM Berger et al.(2008) Barx1_2877	0.603	0.386
barx1 M02107_2.00	Tetraodon nigroviridis	NTAAYNNNN	NNNNRTTAN	PBM Weirauch et al.(2014) pTH6449	0.603	0.386
BARX1 M03144_2.00	Homo sapiens	TAATBGNWWWTTAATBR	YVATTAAWWWNCVATTA	SELEX Jolma et al.(2013) BARX1_1	0.603	0.386
BARX1 M03145_2.00	Homo sapiens	NTAATBRN	NYVATTAN	SELEX Jolma et al.(2013) BARX1_2	0.603	0.386
Barx1 M09181_2.00	Mus musculus	NNWAAKKGYTWH	DWARCMMTTWNN	Misc Kulakovskiy et al.(2013) BARX1_MOUSE.H11MO.0.C	0.603	0.386
Q0N4M8_NEMVE M02166_2.00	Nematostella vectensis	HTAATKAC	GTMATTAD	PBM Weirauch et al.(2014) pTH6215	0.600	0.421
ro M06495_2.00	Drosophila melanogaster	YTAATTA	TAATTAR	B1H Mathelier et al.(2014) MA0241.1	0.600	0.456
ro M06264_2.00	Drosophila melanogaster	NYTAATTA	TAATTARN	B1H Zhu et al.(2011) Ro_Cell_FBgn0003267	0.600	0.456
ro M06265_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Ro_SOLEXA_FBgn0003267	0.600	0.456
Q9BJW6_9CNID M02215_2.00	Sarsia sp. Long Island Sound	NBTAATTAVN	NBTAATTAVN	PBM Weirauch et al.(2014) pTH6287	0.599	0.439
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AAN76333	Homeodomain	84	140	RRKRTVYSPSDLAQLEQYFRANMYPDIHQREELAGQMGLPESRIQVWFQNRRSKAKR
CAJ82536	Homeodomain	84	140	RRKRTVYSPSDLAQLEQYFRANMYPDIHQREELAGQMGLPESRIQVWFQNRRSKAKR

Links
Other Homeodomain family TFs
Other *Xenopus tropicalis* TFs

5858 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACRE_057790	Acremonium chrysogenum	ACRE_057790	N	0.000
AGABI2DRAFT_70614	Agaricus bisporus	AGABI2DRAFT_70614	N	0.000
AMAG_01384	Allomyces macrogynus	AMAG_01384	I	0.000
AMAG_05583	Allomyces macrogynus	AMAG_05583	I	0.000
AMSG_05141	Thecamonas trahens	AMSG_05141	I	0.000
HSFA4A	Arabidopsis thaliana	AT4G18880	D	0.000
HSFB1	Arabidopsis thaliana	AT4G36990	I	0.000
BN946_scf184843.g9	Trametes cinnabarina	BN946_scf184843.g9	I	0.000
BN946_scf184851.g74	Trametes cinnabarina	BN946_scf184851.g74	I	0.000
Bo1g020010	Brassica oleracea	Bo1g020010	I	0.000
Bo7g106320	Brassica oleracea	Bo7g106320	I	0.000
Bo7g118320	Brassica oleracea	Bo7g118320	I	0.000
Bostr.30275s0365	Boechera stricta	Bostr.30275s0365	I	0.000
BOTBODRAFT_102648	Botryobasidium botryosum	BOTBODRAFT_102648	I	0.000
BOTBODRAFT_358406	Botryobasidium botryosum	BOTBODRAFT_358406	N	0.000
Bra011735	Brassica rapa	Bra011735	I	0.000
Bra012571	Brassica rapa	Bra012571	I	0.000
Bra013358	Brassica rapa	Bra013358	I	0.000
Bra017800	Brassica rapa	Bra017800	I	0.000
CADAFLAG00013433	Aspergillus flavus	CADAFLAG00013433	N	0.000
CADAORAG00012206	Aspergillus oryzae	CADAORAG00012206	N	0.000
Cagra.13025s0006	Capsella grandiflora	Cagra.13025s0006	I	0.000
Cagra.4306s0004	Capsella grandiflora	Cagra.4306s0004	I	0.000
Cagra.4909s0039	Capsella grandiflora	Cagra.4909s0039	I	0.000
Carubv10004953m.g	Capsella rubella	Carubv10004953m.g	I	0.000
Carubv10005408m.g	Capsella rubella	Carubv10005408m.g	I	0.000
Carubv10024599m.g	Capsella rubella	Carubv10024599m.g	I	0.000
cassava13765.valid.m1	Manihot esculenta	cassava13765.valid.m1	I	0.000
cassava24811.valid.m1	Manihot esculenta	cassava24811.valid.m1	I	0.000
Ca_02416	Cicer arietinum	Ca_02416	I	0.000
CC1G_08281	Coprinopsis cinerea	CC1G_08281	I	0.000
CERSUDRAFT_48013	Ceriporiopsis subvermispora	CERSUDRAFT_48013	N	0.000
chr2.CM0304.780.nc	Lotus japonicus	chr2.CM0304.780.nc	I	0.000
Ciclev10026058m.g	Citrus clementina	Ciclev10026058m.g	I	0.000
Cucsa.102410	Cucumis sativus	Cucsa.102410	I	0.000
CY34DRAFT_22472	Suillus luteus	CY34DRAFT_22472	N	0.000
CY34DRAFT_62325	Suillus luteus	CY34DRAFT_62325	N	0.000
DACRYDRAFT_21288	Dacryopinax sp	DACRYDRAFT_21288	I	0.000
DICSQDRAFT_139749	Dichomitus squalens	DICSQDRAFT_139749	I	0.000
DRE_06964	Drechslerella stenobrocha	DRE_06964	I	0.000
EDEG_00778	Edhazardia aedis	EDEG_00778	I	0.000
estExt_Genewise1.C_280011	Phycomyces blakesleeanus	estExt_Genewise1.C_280011	N	0.000
estExt_Genewise1.C_310312	Physcomitrella patens	estExt_Genewise1.C_310312	I	0.000
estExt_Genewise1Plus.C_12171	Mucor circinelloides	estExt_Genewise1Plus.C_12171	N	0.000
Eucgr.E02813	Eucalyptus grandis	Eucgr.E02813	I	0.000
e_gw1.1.2474.1	Mucor circinelloides	e_gw1.1.2474.1	I	0.000
e_gw1.3.1300.1	Mycosphaerella graminicola	e_gw1.3.1300.1	N	0.000
e_gw1.6.1274.1	Mucor circinelloides	e_gw1.6.1274.1	I	0.000
e_gw1.8.771.1	Mucor circinelloides	e_gw1.8.771.1	N	0.000
fgenesh1_pg.C_scaffold_3000687	Phanerochaete chrysosporium	fgenesh1_pg.C_scaffold_3000687	I	0.000
fgenesh1_pg.C_scaffold_8000068	Sporobolomyces roseus	fgenesh1_pg.C_scaffold_8000068	I	0.000
AT-HSFA4A	Arabidopsis lyrata	fgenesh2_kg.7__2405__AT4G18880.1	I	0.000
HSF4	Arabidopsis lyrata	fgenesh2_kg.7__342__AT4G36988.1	I	0.000
FIBRA_03155	Fibroporia radiculosa	FIBRA_03155	I	0.000
FOMPIDRAFT_1134545	Fomitopsis pinicola	FOMPIDRAFT_1134545	I	0.000
G647_06910	Cladophialophora carrionii	G647_06910	I	0.000
GALMADRAFT_60919	Galerina marginata	GALMADRAFT_60919	N	0.000
GALMADRAFT_924624	Galerina marginata	GALMADRAFT_924624	N	0.000
GLOINDRAFT_71916	Rhizophagus irregularis	GLOINDRAFT_71916	N	0.000
GLOTRDRAFT_39410	Gloeophyllum trabeum	GLOTRDRAFT_39410	N	0.000
GLYMA08G12630	Glycine max	GLYMA08G12630	I	0.000
Gorai.007G053900	Gossypium raimondii	Gorai.007G053900	I	0.000
Gorai.008G244400	Gossypium raimondii	Gorai.008G244400	I	0.000
Gorai.011G036400	Gossypium raimondii	Gorai.011G036400	I	0.000
Gorai.011G105700	Gossypium raimondii	Gorai.011G105700	I	0.000
Gorai.N013300	Gossypium raimondii	Gorai.N013300	I	0.000
GSPATT00026202001	Paramecium tetraurelia	GSPATT00026202001	N	0.000
GSPATT00033038001	Paramecium tetraurelia	GSPATT00033038001	N	0.000
GSPATT00036105001	Paramecium tetraurelia	GSPATT00036105001	N	0.000
GSTUM_00004466001	Tuber melanosporum	GSTUM_00004466001	N	0.000
gw1.1.2475.1	Mucor circinelloides	gw1.1.2475.1	I	0.000
gw1.3.1948.1	Mucor circinelloides	gw1.3.1948.1	I	0.000
gw1.42.207.1	Physcomitrella patens	gw1.42.207.1	I	0.000
gw1.5.1361.1	Mucor circinelloides	gw1.5.1361.1	N	0.000
gw1.8.770.1	Mucor circinelloides	gw1.8.770.1	N	0.000
gw1.8.772.1	Mucor circinelloides	gw1.8.772.1	N	0.000
GYMLUDRAFT_144307	Gymnopus luxurians	GYMLUDRAFT_144307	N	0.000
HETIRDRAFT_244333	Heterobasidion irregulare	HETIRDRAFT_244333	N	0.000
HETIRDRAFT_380701	Heterobasidion irregulare	HETIRDRAFT_380701	N	0.000
J056_001839	Wallemia ichthyophaga	J056_001839	I	0.000
JAAARDRAFT_122806	Jaapia argillacea	JAAARDRAFT_122806	I	0.000
K437DRAFT_224239	Tilletiaria anomala	K437DRAFT_224239	I	0.000
K443DRAFT_90832	Laccaria amethystina	K443DRAFT_90832	I	0.000
LACBIDRAFT_150048	Laccaria bicolor	LACBIDRAFT_150048	I	0.000
LACBIDRAFT_300067	Laccaria bicolor	LACBIDRAFT_300067	I	0.000
Lus10005420.g	Linum usitatissimum	Lus10005420.g	I	0.000
Lus10015237.g	Linum usitatissimum	Lus10015237.g	I	0.000
Lus10018488.g	Linum usitatissimum	Lus10018488.g	I	0.000
Lus10040911.g	Linum usitatissimum	Lus10040911.g	I	0.000
M378DRAFT_184361	Amanita muscaria	M378DRAFT_184361	N	0.000
M404DRAFT_161564	Pisolithus tinctorius	M404DRAFT_161564	N	0.000
M404DRAFT_484428	Pisolithus tinctorius	M404DRAFT_484428	N	0.000
M407DRAFT_35594	Tulasnella calospora	M407DRAFT_35594	I	0.000
M407DRAFT_66111	Tulasnella calospora	M407DRAFT_66111	I	0.000
M408DRAFT_38378	Serendipita vermifera	M408DRAFT_38378	N	0.000
M413DRAFT_74768	Hebeloma cylindrosporum	M413DRAFT_74768	N	0.000
MELLADRAFT_31826	Melampsora laricipopulina	MELLADRAFT_31826	N	0.000
MELLADRAFT_42736	Melampsora laricipopulina	MELLADRAFT_42736	I	0.000
mgf006143m	Mimulus guttatus	mgf006143m	I	0.000
mgf014237m	Mimulus guttatus	mgf014237m	I	0.000
Moror_15941	Moniliophthora roreri	Moror_15941	N	0.000
Moror_17043	Moniliophthora roreri	Moror_17043	N	0.000
MTR_8g087540	Medicago truncatula	MTR_8g087540	I	0.000
Mycgr3G38379	Zymoseptoria tritici	Mycgr3G38379	N	0.000
PaG_01262	Pseudozyma aphidis	PaG_01262	I	0.000
PAN0_017c5548	Pseudozyma antarctica	PAN0_017c5548	I	0.000
PAXINDRAFT_87057	Paxillus involutus	PAXINDRAFT_87057	N	0.000
PAXRUDRAFT_149609	Paxillus rubicundulus	PAXRUDRAFT_149609	N	0.000
PAXRUDRAFT_162335	Paxillus rubicundulus	PAXRUDRAFT_162335	I	0.000
PFL1_03124	Pseudozyma flocculosa	PFL1_03124	N	0.000
PFL1_05375	Pseudozyma flocculosa	PFL1_05375	I	0.000
PFL1_05463	Pseudozyma flocculosa	PFL1_05463	N	0.000
PGSC0003DMG400017334	Solanum tuberosum	PGSC0003DMG400017334	I	0.000
PGSC0003DMG400017484	Solanum tuberosum	PGSC0003DMG400017484	I	0.000
PGSC0003DMG400027036	Solanum tuberosum	PGSC0003DMG400027036	I	0.000
PGSC0003DMG401004023	Solanum tuberosum	PGSC0003DMG401004023	I	0.000
PGSC0003DMG401027812	Solanum tuberosum	PGSC0003DMG401027812	I	0.000
PGTG_02256	Puccinia graminis	PGTG_02256	I	0.000
PHACADRAFT_119777	Phanerochaete carnosa	PHACADRAFT_119777	I	0.000
PHACADRAFT_264175	Phanerochaete carnosa	PHACADRAFT_264175	I	0.000
PHSY_000528	Pseudozyma hubeiensis	PHSY_000528	N	0.000
PHSY_005564	Pseudozyma hubeiensis	PHSY_005564	I	0.000
PHSY_006817	Pseudozyma hubeiensis	PHSY_006817	I	0.000
PIIN_04679	Piriformospora indica	PIIN_04679	I	0.000
PILCRDRAFT_30307	Piloderma croceum	PILCRDRAFT_30307	N	0.000
PILCRDRAFT_816387	Piloderma croceum	PILCRDRAFT_816387	I	0.000
PISMIDRAFT_648350	Pisolithus microcarpus	PISMIDRAFT_648350	N	0.000
PK02428.1	Cannabis sativa	PK02428.1	I	0.000
PLEOSDRAFT_1043224	Pleurotus ostreatus	PLEOSDRAFT_1043224	N	0.000
PLEOSDRAFT_1046174	Pleurotus ostreatus	PLEOSDRAFT_1046174	I	0.000
PLEOSDRAFT_1087686	Pleurotus ostreatus	PLEOSDRAFT_1087686	I	0.000
HSF4	Populus trichocarpa	POPTR_0007s11030	I	0.000
POPTR_0011s06820	Populus trichocarpa	POPTR_0011s06820	I	0.000
POSPLDRAFT_96258	Postia placenta	POSPLDRAFT_96258	I	0.000
PSEUBRA_SCAF21g03367	Pseudozyma brasiliensis	PSEUBRA_SCAF21g03367	I	0.000
PSEUBRA_SCAF7g04459	Pseudozyma brasiliensis	PSEUBRA_SCAF7g04459	I	0.000
PTTG_04989	Puccinia triticina	PTTG_04989	N	0.000
RHTO_01429	Rhodosporidium toruloides	RHTO_01429	I	0.000
RHTO_06861	Rhodosporidium toruloides	RHTO_06861	I	0.000
RO3G_03231	Rhizopus oryzae	RO3G_03231	N	0.000
RO3G_05814	Rhizopus oryzae	RO3G_05814	I	0.000
RO3G_15483	Rhizopus oryzae	RO3G_15483	N	0.000
RTG_02995	Rhodotorula glutinis	RTG_02995	I	0.000
SCHCODRAFT_269941	Schizophyllum commune	SCHCODRAFT_269941	I	0.000
SCLCIDRAFT_106370	Scleroderma citrinum	SCLCIDRAFT_106370	I	0.000
SCLCIDRAFT_1218516	Scleroderma citrinum	SCLCIDRAFT_1218516	I	0.000
SELMODRAFT_107503	Selaginella moellendorffii	SELMODRAFT_107503	I	0.000
SELMODRAFT_110881	Selaginella moellendorffii	SELMODRAFT_110881	I	0.000
SERLA73DRAFT_60481	Serpula lacrymans	SERLA73DRAFT_60481	I	0.000
SERLA73DRAFT_66913	Serpula lacrymans	SERLA73DRAFT_66913	N	0.000
Solyc02g090820.2	Solanum lycopersicum	Solyc02g090820.2	I	0.000
Solyc03g006000.2	Solanum lycopersicum	Solyc03g006000.2	I	0.000
Solyc06g072750.2	Solanum lycopersicum	Solyc06g072750.2	I	0.000
Solyc07g055710.2	Solanum lycopersicum	Solyc07g055710.2	I	0.000
Solyc09g059520.2	Solanum lycopersicum	Solyc09g059520.2	I	0.000
SPPG_01116	Spizellomyces punctatus	SPPG_01116	I	0.000
SPPG_03494	Spizellomyces punctatus	SPPG_03494	N	0.000
SPPG_05445	Spizellomyces punctatus	SPPG_05445	I	0.000
SPPG_06481	Spizellomyces punctatus	SPPG_06481	I	0.000
SPPG_07283	Spizellomyces punctatus	SPPG_07283	I	0.000
sr10015	Sporisorium reilianum	sr10015	I	0.000
sr13089	Sporisorium reilianum	sr13089	N	0.000
sr14344	Sporisorium reilianum	sr14344	N	0.000
TCM_011279	Theobroma cacao	TCM_011279	I	0.000
Thhalv10025409m.g	Eutrema salsugineum	Thhalv10025409m.g	I	0.000
Thhalv10025906m.g	Eutrema salsugineum	Thhalv10025906m.g	I	0.000
TTHERM_00794590	Tetrahymena thermophila	TTHERM_00794590	N	0.000
UHOR_03142	Ustilago hordei	UHOR_03142	N	0.000
UHOR_08093	Ustilago hordei	UHOR_08093	I	0.000
UM05182	Ustilago maydis	UM05182	N	0.000
UM05274	Ustilago maydis	UM05274	I	0.000
V565_035120	Rhizoctonia solani	V565_035120	N	0.000
V565_116890	Rhizoctonia solani	V565_116890	I	0.000
VDAG_07492	Verticillium dahliae	VDAG_07492	N	0.000
VDBG_05547	Verticillium albo atrum	VDBG_05547	N	0.000
VDBG_05547	Verticillium alfalfae	VDBG_05547	N	0.000
WALSEDRAFT_18221	Wallemia sebi	WALSEDRAFT_18221	N	0.000
YALI0_D04785g	Yarrowia lipolytica	YALI0_D04785g	I	0.000
YALI0_E13948g	Yarrowia lipolytica	YALI0_E13948g	I	0.000

bix1.1 (Xenopus tropicalis) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

5858 Related TFs

bix1.1 **(Xenopus tropicalis)
Homeodomain**