CGOC_0001359801 (Cylicostephanus goldi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 CGOC_0001359801 T233336_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Lhx4
M00430_2.00 		Mus musculus
NYAATHN
NDATTRN		 PBM
Berger et al.(2008)
Lhx4_1719 		0.407 1.000
Lhx3
M00435_2.00 		Mus musculus
NNNYAATHW
WDATTRNNN		 PBM
Berger et al.(2008)
Lhx3_3431 		0.407 1.000
Lim3
M02116_2.00 		Drosophila melanogaster
NNNNNATBRN
NYVATNNNNN		 PBM
Weirauch et al.(2014)
pTH6478 		0.407 1.000
Lhx4
M03257_2.00 		Mus musculus
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
Lhx4_1 		0.407 1.000
Lim3
M03796_2.00 		Drosophila melanogaster
BTAATTAV
BTAATTAV		 SELEX
Nitta et al.(2015)
Lim3_1 		0.407 1.000
LHX4
M05063_2.00 		Homo sapiens
BYAATYRV
BYRATTRV		 SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX 		0.407 1.000
LHX4
M05066_2.00 		Homo sapiens
BTAATTAN
NTAATTAV		 SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX 		0.407 1.000
Lim3
M06492_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Mathelier et al.(2014)
MA0195.1 		0.407 1.000
Lim3
M06258_2.00 		Drosophila melanogaster
HHTAATKA
TMATTADD		 B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023 		0.407 1.000
Lim3
M06259_2.00 		Drosophila melanogaster
HTRATTR
YAATYAD		 B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023 		0.407 1.000
Lhx3
M02687_2.00 		Mus musculus
VRWTAATTAATTW
WAATTAATTAWYB		 SELEX
Mathelier et al.(2014)
MA0135.1 		0.407 1.000
LHX3
M09137_2.00 		Homo sapiens
NYTAATTAAWTHH
DDAWTTAATTARN		 Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C 		0.407 1.000
Lhx3
M09188_2.00 		Mus musculus
NYTRATKRV
BYMATYARN		 Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C 		0.407 1.000
Lhx3
M09570_2.00 		Mus musculus
NNBTAATTAV
BTAATTAVNN		 Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456 		0.407 1.000
LHX3
M10657_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3A_01 		0.407 1.000
LHX3
M10658_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3b_01 		0.407 1.000
LHX3
M10659_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3_Q3 		0.407 1.000
LHX4
M05064_2.00 		Homo sapiens
BYAATTRV
BYAATTRV		 SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1 		0.407 1.000
LHX4
M05065_2.00 		Homo sapiens
NTWAYGHN
NDCRTWAN		 SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2 		0.407 1.000
LHX4
M05067_2.00 		Homo sapiens
NYAATTRN
NYAATTRN		 SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1 		0.407 1.000
LHX4
M05068_2.00 		Homo sapiens
NTAAYGHN
NDCRTTAN		 SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2 		0.407 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CGOC_0001359801-mRNA-1 Homeodomain 1 17

Links

Other Homeodomain family TFs
Other Cylicostephanus goldi TFs

918 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29950.m001171 Ricinus communis 29950.m001171 I
ANAC087 Arabidopsis thaliana AT5G18270 D
Bo9g175670 Brassica oleracea Bo9g175670 I
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I
Carubv10001373m.g Capsella rubella Carubv10001373m.g I
cassava25877.m1 Manihot esculenta cassava25877.m1 I
Ca_08255 Cicer arietinum Ca_08255 I
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I
Eucgr.A02074 Eucalyptus grandis Eucgr.A02074 I
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I
F775_13622 Aegilops tauschii F775_13622 N
F775_16032 Aegilops tauschii F775_16032 I
F775_29497 Aegilops tauschii F775_29497 I
F775_32919 Aegilops tauschii F775_32919 N
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I
GLYMA16G04720 Glycine max GLYMA16G04720 I
GLYMA19G28515 Glycine max GLYMA19G28515 I
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I
GRMZM2G154182 Zea mays GRMZM2G154182 N
MLOC_5374 Hordeum vulgare MLOC_5374 N
MLOC_58272 Hordeum vulgare MLOC_58272 N
MLOC_72737 Hordeum vulgare MLOC_72737 I
MTR_6g032770 Medicago truncatula MTR_6g032770 I
MTR_7g085260 Medicago truncatula MTR_7g085260 I
Pavir.Ba02955 Panicum virgatum Pavir.Ba02955 I
Pavir.Bb02033 Panicum virgatum Pavir.Bb02033 I
Pavir.Eb00839 Panicum virgatum Pavir.Eb00839 I
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I
Sb03g008860 Sorghum bicolor Sb03g008860 N
TCM_026028 Theobroma cacao TCM_026028 I
TRAES3BF020100120CFD_g Triticum aestivum TRAES3BF020100120CFD_g I
TRAES3BF020100130CFD_g Triticum aestivum TRAES3BF020100130CFD_g N
Traes_3AS_4220612F3 Triticum aestivum Traes_3AS_4220612F3 I
Traes_3DS_3520D86D7 Triticum aestivum Traes_3DS_3520D86D7 N
Traes_5AL_373E730BB Triticum aestivum Traes_5AL_373E730BB I
Traes_5BL_59AFA4B01 Triticum aestivum Traes_5BL_59AFA4B01 I
Traes_7AS_CB673ED0C Triticum aestivum Traes_7AS_CB673ED0C N
Traes_7BS_BA1111780 Triticum aestivum Traes_7BS_BA1111780 N
Traes_7BS_CF3224FD0 Triticum aestivum Traes_7BS_CF3224FD0 N
Traes_7DS_2452C1E32 Triticum aestivum Traes_7DS_2452C1E32 I
Traes_7DS_6418D89A3 Triticum aestivum Traes_7DS_6418D89A3 N
TRIUR3_23644 Triticum urartu TRIUR3_23644 I
TRIUR3_25136 Triticum urartu TRIUR3_25136 I