HSF4 (Vitis vinifera)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 VIT_07s0031g00670 T242454_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.446 0.770
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.440 0.724
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.440 0.724
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.438 0.713
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.438 0.713
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.420 0.701
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.420 0.701
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.405 0.690
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.405 0.690
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.398 0.621
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.398 0.621
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.398 0.621
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.389 0.644
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.379 0.667
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.379 0.667
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.363 0.598
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.363 0.598
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.362 0.678
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.362 0.678
HSF1
M03329_2.00 		Homo sapiens
GAANVTTCBVGAA
TTCBVGAABNTTC		 SELEX
Jolma et al.(2013)
HSF1_1 		0.338 0.575
HSF1
M03330_2.00 		Homo sapiens
GAANRTTCBAGAA
TTCTVGAAYNTTC		 SELEX
Jolma et al.(2013)
HSF1_2 		0.338 0.575
HSF1
M05523_2.00 		Homo sapiens
VGAABVTTCBVGAWN
NWTCBVGAABVTTCB		 SELEX
Yin et al.(2017)
HSF1_eDBD_HT-SELEX 		0.338 0.575
HSF1
M05525_2.00 		Homo sapiens
VGAANRTTCKVGAAN
NTTCBMGAAYNTTCB		 SELEX
Yin et al.(2017)
HSF1_FL_HT-SELEX 		0.338 0.575
HSF1
M07977_2.00 		Homo sapiens
GDCSYGGGTTCRADYCCC
GGGRHTYGAACCCRSGHC		 ChIP-seq
Gerstein et al.(2012)
HepG2_HSF1_Stanford 		0.338 0.575
HSF1
M09230_2.00 		Homo sapiens
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Kulakovskiy et al.(2013)
HSF1_HUMAN.H11MO.0.A 		0.338 0.575
Hsf1
M09232_2.00 		Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Kulakovskiy et al.(2013)
HSF1_MOUSE.H11MO.0.A 		0.338 0.575
HSF1
M09592_2.00 		Homo sapiens
NNBBCYRGAANNTTCYRGVV
BBCYRGAANNTTCYRGVVNN		 Misc
Heinz et al.(2010)
HepG2-HSF1_GSE31477 		0.338 0.575
Hsf1
M09593_2.00 		Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Heinz et al.(2010)
Striatum-HSF1_GSE38000 		0.338 0.575
HSF1
M10863_2.00 		Homo sapiens
NGAAHNTTCY
RGAANDTTCN		 Transfac
Matys et al.(2006)
V$HSF1_01 		0.338 0.575
HSF1
M10864_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q5_01 		0.338 0.575
HSF1
M10865_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q5 		0.338 0.575
HSF1
M10866_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q6_01 		0.338 0.575
HSF1
M10867_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q6 		0.338 0.575
HSF1
M10868_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF_Q6 		0.338 0.575
HSF1
M05524_2.00 		Homo sapiens
RGAANRTTCYRGAWN
NWTCYRGAAYNTTCY		 SELEX
Yin et al.(2017)
HSF1_eDBD_Methyl-HT-SELEX 		0.338 0.575
HSF1
M05526_2.00 		Homo sapiens
RGAANVTTCYRGAWN
NWTCYRGAABNTTCY		 SELEX
Yin et al.(2017)
HSF1_FL_Methyl-HT-SELEX 		0.338 0.575
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_07s0031g00670.t01 HSF 10 100

Links

Other HSF family TFs
Other Vitis vinifera TFs

1504 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29950.m001173 Ricinus communis 29950.m001173 I
30078.m002348 Ricinus communis 30078.m002348 I
anac045 Arabidopsis lyrata Al_scaffold_0003_260 I
NAC018 Arabidopsis thaliana AT1G52880 D
NAC045 Arabidopsis thaliana AT3G03200 D
NAC047 Arabidopsis thaliana AT3G04070 D
Bo1g128420 Brassica oleracea Bo1g128420 I
Bo1g154830 Brassica oleracea Bo1g154830 I
Bo5g148420 Brassica oleracea Bo5g148420 I
Bo5g150170 Brassica oleracea Bo5g150170 I
Bostr.0124s0081 Boechera stricta Bostr.0124s0081 I
Bostr.19046s0031 Boechera stricta Bostr.19046s0031 I
Bostr.2570s0301 Boechera stricta Bostr.2570s0301 I
Bra021114 Brassica rapa Bra021114 I
Bra021366 Brassica rapa Bra021366 I
Bra031949 Brassica rapa Bra031949 I
Bra032009 Brassica rapa Bra032009 I
Bra040152 Brassica rapa Bra040152 I
Cagra.0946s0024 Capsella grandiflora Cagra.0946s0024 I
Cagra.2026s0001 Capsella grandiflora Cagra.2026s0001 I
Cagra.2098s0066 Capsella grandiflora Cagra.2098s0066 I
Carubv10009524m.g Capsella rubella Carubv10009524m.g I
Carubv10013584m.g Capsella rubella Carubv10013584m.g I
Carubv10014000m.g Capsella rubella Carubv10014000m.g I
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I
cassava35701.valid.m1 Manihot esculenta cassava35701.valid.m1 I
chr1.CM0104.240.nc Lotus japonicus chr1.CM0104.240.nc I
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I
Eucgr.B02485 Eucalyptus grandis Eucgr.B02485 I
anac047 Arabidopsis lyrata fgenesh2_kg.3__367__AT3G04070.1 I
GLYMA02G07700 Glycine max GLYMA02G07700 I
GLYMA12G22790 Glycine max GLYMA12G22790 I
GLYMA16G04740 Glycine max GLYMA16G04740 I
GLYMA16G26740 Glycine max GLYMA16G26740 I
GLYMA19G28476 Glycine max GLYMA19G28476 I
Gorai.007G267900 Gossypium raimondii Gorai.007G267900 I
Gorai.013G191800 Gossypium raimondii Gorai.013G191800 I
Lus10003269.g Linum usitatissimum Lus10003269.g I
Lus10006547.g Linum usitatissimum Lus10006547.g I
Lus10011215.g Linum usitatissimum Lus10011215.g I
Lus10018469.g Linum usitatissimum Lus10018469.g I
Lus10042531.g Linum usitatissimum Lus10042531.g I
MDP0000674514 Malus domestica MDP0000674514 I
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I
POPTR_0013s05080 Populus trichocarpa POPTR_0013s05080 I
POPTR_0019s04690 Populus trichocarpa POPTR_0019s04690 I
SapurV1A.0867s0160 Salix purpurea SapurV1A.0867s0160 I
SapurV1A.1058s0080 Salix purpurea SapurV1A.1058s0080 I
SapurV1A.1196s0040 Salix purpurea SapurV1A.1196s0040 I
SapurV1A.2115s0010 Salix purpurea SapurV1A.2115s0010 I
TCM_026030 Theobroma cacao TCM_026030 I
Thhalv10021011m.g Eutrema salsugineum Thhalv10021011m.g I
Thhalv10022055m.g Eutrema salsugineum Thhalv10022055m.g I
Thhalv10023058m.g Eutrema salsugineum Thhalv10023058m.g I
anac047 Vitis vinifera VIT_08s0007g07670 I