scaffold_403397.1 (Arabidopsis lyrata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 scaffold_403397.1 T245996_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.852 0.852
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.852 0.852
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403397.1 LOB 2 83

Links

Other LOB family TFs
Other Arabidopsis lyrata TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SIGE Arabidopsis thaliana AT5G24120 N
BGIOSGA020460 Oryza indica BGIOSGA020460 N
Bo9g013770 Brassica oleracea Bo9g013770 N
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N
Bra026466 Brassica rapa Bra026466 N
BRADI2G14790 Brachypodium distachyon BRADI2G14790 N
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N
Carubv10000608m.g Capsella rubella Carubv10000608m.g N
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N
Ca_03953 Cicer arietinum Ca_03953 N
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N
Cla004302 Citrullus lanatus Cla004302 N
Cucsa.012950 Cucumis sativus Cucsa.012950 N
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N
F775_08366 Aegilops tauschii F775_08366 N
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N
GLYMA04G41691 Glycine max GLYMA04G41691 N
GLYMA06G13100 Glycine max GLYMA06G13100 N
GLYMA13G08390 Glycine max GLYMA13G08390 N
GLYMA14G31370 Glycine max GLYMA14G31370 N
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N
GRMZM2G077436 Zea mays GRMZM2G077436 N
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N
LPERR05G23180 Leersia perrieri LPERR05G23180 N
Lus10014934.g Linum usitatissimum Lus10014934.g N
MDP0000831937 Malus domestica MDP0000831937 N
mgf001401m Mimulus guttatus mgf001401m N
mgf006107m Mimulus guttatus mgf006107m N
MLOC_61094 Hordeum vulgare MLOC_61094 N
OB05G35020 Oryza brachyantha OB05G35020 N
OBART05G27520 Oryza barthii OBART05G27520 N
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N
OLONG_028119 Oryza longistaminata OLONG_028119 N
OMERI05G23510 Oryza meridionalis OMERI05G23510 N
ONIVA05G29570 Oryza nivara ONIVA05G29570 N
OPUNC05G25110 Oryza punctata OPUNC05G25110 N
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N
Pavir.J13718 Panicum virgatum Pavir.J13718 N
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N
Sb09g030110 Sorghum bicolor Sb09g030110 N
Si021904m.g Setaria italica Si021904m.g N
TCM_015349 Theobroma cacao TCM_015349 N
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N
TRIUR3_33378 Triticum urartu TRIUR3_33378 N
SIGE Vitis vinifera VIT_16s0050g02520 N