Cla017388 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla017388 T246350_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.869 0.869
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla017388 LOB 10 108

Links

Other LOB family TFs
Other Citrullus lanatus TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_20978 Ancylostoma caninum ANCCAN_20978 I 0.000
ASIM_0001604001 Anisakis simplex ASIM_0001604001 I 0.000
ASU_13433 Ascaris suum ASU_13433 I 0.000
Bm3575 Brugia malayi Bm3575 I 0.000
BTMF_0000404601 Brugia timori BTMF_0000404601 I 0.000
EEL_0000707501 Elaeophora elaphi EEL_0000707501 I 0.000
EVEC_0000355201 Enterobius vermicularis EVEC_0000355201 I 0.000
genemark-nMf.1.1.scaf08549-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf08549-processed-gene-0.3 N 0.000
GPUH_0001329001 Gongylonema pulchrum GPUH_0001329001 I 0.000
HCOI00676200 Haemonchus contortus HCOI00676200 I 0.000
HPBE_0001599301 Heligmosomoides bakeri HPBE_0001599301 I 0.000
L898_g17086 Steinernema monticolum L898_g17086 I 0.000
LOAG_08923 Loa loa LOAG_08923 I 0.000
MhA1_Contig1148.frz3.fgene1 Meloidogyne hapla MhA1_Contig1148.frz3.fgene1 N 0.000
Minc15475 Meloidogyne incognita Minc15475 N 0.000
nAv.1.0.1.g00430 Acanthocheilonema viteae nAv.1.0.1.g00430 I 0.000
NBR_0001502601 Nippostrongylus brasiliensis NBR_0001502601 N 0.000
nDi.2.2.2.g01429 Dirofilaria immitis nDi.2.2.2.g01429 I 0.000
NECAME_01081 Necator americanus NECAME_01081 N 0.000
nOo.2.0.1.g00181 Onchocerca ochengi nOo.2.0.1.g00181 I 0.000
OESDEN_03018 Oesophagostomum dentatum OESDEN_03018 I 0.000
SVUK_0000938201 Strongylus vulgaris SVUK_0000938201 I 0.000
TELCIR_19676 Teladorsagia circumcincta TELCIR_19676 I 0.000
WBGene00241622 Onchocerca volvulus WBGene00241622 I 0.000
WUBG_02880 Wuchereria bancrofti WUBG_02880 I 0.000