OB02G29310 (Oryza brachyantha)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OB02G29310 T254891_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.979 0.979
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.854 0.854
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.854 0.854
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.750 0.750
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.750 0.750
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.729 0.729
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.729 0.729
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.729 0.729
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.729 0.729
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.729 0.729
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.729 0.729
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.729 0.729
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.729 0.729
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.729 0.729
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.729 0.729
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.729 0.729
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.729 0.729
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.729 0.729
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.729 0.729
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.729 0.729
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.729 0.729
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.729 0.729
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.729 0.729
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.729 0.729
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.708 0.708
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB02G29310.1 MADS box 10 57

Links

Other MADS box family TFs
Other Oryza brachyantha TFs

973 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29598.m000468 Ricinus communis 29598.m000468 I 0.000
29883.m001986 Ricinus communis 29883.m001986 I 0.000
30131.m007078 Ricinus communis 30131.m007078 I 0.000
30138.m003866 Ricinus communis 30138.m003866 I 0.000
AMTR_s00002p00268140 Amborella trichopoda AMTR_s00002p00268140 I 0.000
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I 0.000
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I 0.000
Aquca_018_00141 Aquilegia coerulea Aquca_018_00141 I 0.000
BGIOSGA006734 Oryza indica BGIOSGA006734 I 0.000
BGIOSGA007649 Oryza indica BGIOSGA007649 I 0.000
BGIOSGA020738 Oryza indica BGIOSGA020738 I 0.000
BGIOSGA020743 Oryza indica BGIOSGA020743 I 0.000
BGIOSGA037742 Oryza indica BGIOSGA037742 I 0.000
Bo2g012800 Brassica oleracea Bo2g012800 I 0.000
Bo7g093030 Brassica oleracea Bo7g093030 I 0.000
Bostr.2902s0318 Boechera stricta Bostr.2902s0318 I 0.000
Bra010010 Brassica rapa Bra010010 I 0.000
Bra020620 Brassica rapa Bra020620 I 0.000
Cagra.6845s0027 Capsella grandiflora Cagra.6845s0027 I 0.000
cassava18334.valid.m1 Manihot esculenta cassava18334.valid.m1 I 0.000
cassava18571.valid.m1 Manihot esculenta cassava18571.valid.m1 I 0.000
cassava18832.valid.m1 Manihot esculenta cassava18832.valid.m1 I 0.000
cassava18833.valid.m1 Manihot esculenta cassava18833.valid.m1 I 0.000
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I 0.000
cassava24010.valid.m1 Manihot esculenta cassava24010.valid.m1 I 0.000
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I 0.000
cassava32522.m1 Manihot esculenta cassava32522.m1 I 0.000
cassava46237.m1 Manihot esculenta cassava46237.m1 I 0.000
Ca_01234 Cicer arietinum Ca_01234 I 0.000
Ca_03753 Cicer arietinum Ca_03753 I 0.000
chr2.CM0124.640.nd Lotus japonicus chr2.CM0124.640.nd I 0.000
chr5.LjT29J15.10.nc Lotus japonicus chr5.LjT29J15.10.nc I 0.000
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I 0.000
Ciclev10008515m.g Citrus clementina Ciclev10008515m.g I 0.000
Ciclev10020133m.g Citrus clementina Ciclev10020133m.g I 0.000
Ciclev10032777m.g Citrus clementina Ciclev10032777m.g I 0.000
Cla005975 Citrullus lanatus Cla005975 I 0.000
Cla011478 Citrullus lanatus Cla011478 I 0.000
Cla015037 Citrullus lanatus Cla015037 I 0.000
Cla016748 Citrullus lanatus Cla016748 I 0.000
Cla020112 Citrullus lanatus Cla020112 I 0.000
Cla020641 Citrullus lanatus Cla020641 I 0.000
CPRF2_PETCR Petroselinum crispum CPRF2_PETCR D 0.000
Cucsa.133290 Cucumis sativus Cucsa.133290 I 0.000
Cucsa.238410 Cucumis sativus Cucsa.238410 I 0.000
Cucsa.284240 Cucumis sativus Cucsa.284240 I 0.000
Cucsa.289120 Cucumis sativus Cucsa.289120 I 0.000
Cucsa.388800 Cucumis sativus Cucsa.388800 I 0.000
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I 0.000
estExt_Genewise1.C_2060077 Physcomitrella patens estExt_Genewise1.C_2060077 D 0.000
Eucgr.C03986 Eucalyptus grandis Eucgr.C03986 I 0.000
Eucgr.H04338 Eucalyptus grandis Eucgr.H04338 I 0.000
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I 0.000
AtbZIP3 Arabidopsis lyrata fgenesh2_kg.6__1562__AT5G15830.1 I 0.000
BZO2H3 Arabidopsis lyrata fgenesh2_kg.6__2797__AT5G28770.2 I 0.000
gene04504-v1.0-hybrid Fragaria vesca gene04504-v1.0-hybrid I 0.000
gene08757-v1.0-hybrid Fragaria vesca gene08757-v1.0-hybrid I 0.000
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I 0.000
GLYMA01G09510 Glycine max GLYMA01G09510 I 0.000
GLYMA02G13960 Glycine max GLYMA02G13960 I 0.000
GLYMA03G40730 Glycine max GLYMA03G40730 I 0.000
GLYMA10G30410 Glycine max GLYMA10G30410 I 0.000
GLYMA19G43420 Glycine max GLYMA19G43420 I 0.000
GLYMA20G36750 Glycine max GLYMA20G36750 I 0.000
Gorai.001G251000 Gossypium raimondii Gorai.001G251000 I 0.000
Gorai.004G075400 Gossypium raimondii Gorai.004G075400 I 0.000
Gorai.004G218300 Gossypium raimondii Gorai.004G218300 I 0.000
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I 0.000
Gorai.007G141500 Gossypium raimondii Gorai.007G141500 I 0.000
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I 0.000
GRMZM2G073427 Zea mays GRMZM2G073427 I 0.000
GRMZM2G098904 Zea mays GRMZM2G098904 I 0.000
GRMZM2G103647 Zea mays GRMZM2G103647 I 0.000
GSMUA_Achr10G08670_001 Musa acuminata GSMUA_Achr10G08670_001 I 0.000
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I 0.000
GSMUA_Achr1G15640_001 Musa acuminata GSMUA_Achr1G15640_001 I 0.000
GSMUA_Achr1G23640_001 Musa acuminata GSMUA_Achr1G23640_001 I 0.000
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I 0.000
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I 0.000
GSMUA_Achr7G07650_001 Musa acuminata GSMUA_Achr7G07650_001 I 0.000
gw1.220.22.1 Physcomitrella patens gw1.220.22.1 I 0.000
gw1.83.117.1 Physcomitrella patens gw1.83.117.1 I 0.000
LPERR02G04950 Leersia perrieri LPERR02G04950 I 0.000
LPERR06G19690 Leersia perrieri LPERR06G19690 I 0.000
LPERR12G15130 Leersia perrieri LPERR12G15130 I 0.000
Lus10006590.g Linum usitatissimum Lus10006590.g I 0.000
Lus10013059.g Linum usitatissimum Lus10013059.g I 0.000
Lus10015913.g Linum usitatissimum Lus10015913.g I 0.000
Lus10026973.g Linum usitatissimum Lus10026973.g I 0.000
Lus10029101.g Linum usitatissimum Lus10029101.g I 0.000
MDP0000176747 Malus domestica MDP0000176747 I 0.000
MDP0000183562 Malus domestica MDP0000183562 I 0.000
MDP0000270365 Malus domestica MDP0000270365 I 0.000
MDP0000431572 Malus domestica MDP0000431572 I 0.000
MDP0000441891 Malus domestica MDP0000441891 I 0.000
MDP0000891108 Malus domestica MDP0000891108 I 0.000
MDP0000891899 Malus domestica MDP0000891899 I 0.000
mgf007535m Mimulus guttatus mgf007535m I 0.000
mgf009803m Mimulus guttatus mgf009803m I 0.000
mgf012838m Mimulus guttatus mgf012838m I 0.000
mgf013074m Mimulus guttatus mgf013074m I 0.000
mgf017392m Mimulus guttatus mgf017392m I 0.000
MTR_1g080920 Medicago truncatula MTR_1g080920 I 0.000
MTR_7g029400 Medicago truncatula MTR_7g029400 I 0.000
MTR_7g115120 Medicago truncatula MTR_7g115120 I 0.000
OB02G14920 Oryza brachyantha OB02G14920 I 0.000
OB02G19520 Oryza brachyantha OB02G19520 I 0.000
OB06G31430 Oryza brachyantha OB06G31430 I 0.000
OBART02G11580 Oryza barthii OBART02G11580 I 0.000
OBART06G23730 Oryza barthii OBART06G23730 I 0.000
OBART12G18120 Oryza barthii OBART12G18120 I 0.000
OGLUM02G05620 Oryza glumaepatula OGLUM02G05620 I 0.000
OGLUM02G11500 Oryza glumaepatula OGLUM02G11500 I 0.000
OGLUM06G24950 Oryza glumaepatula OGLUM06G24950 I 0.000
OGLUM12G19660 Oryza glumaepatula OGLUM12G19660 I 0.000
OLONG_019560 Oryza longistaminata OLONG_019560 I 0.000
OLONG_021042 Oryza longistaminata OLONG_021042 I 0.000
OMERI02G06470 Oryza meridionalis OMERI02G06470 I 0.000
OMERI02G12230 Oryza meridionalis OMERI02G12230 I 0.000
OMERI06G23650 Oryza meridionalis OMERI06G23650 I 0.000
ONIVA02G06040 Oryza nivara ONIVA02G06040 I 0.000
ONIVA02G12920 Oryza nivara ONIVA02G12920 I 0.000
ONIVA06G27820 Oryza nivara ONIVA06G27820 I 0.000
ONIVA12G16860 Oryza nivara ONIVA12G16860 I 0.000
OPUNC02G10230 Oryza punctata OPUNC02G10230 I 0.000
OPUNC06G21410 Oryza punctata OPUNC06G21410 I 0.000
OPUNC12G16360 Oryza punctata OPUNC12G16360 I 0.000
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I 0.000
orange1.1g013166m.g Citrus sinensis orange1.1g013166m.g I 0.000
orange1.1g015739m.g Citrus sinensis orange1.1g015739m.g I 0.000
orange1.1g043159m.g Citrus sinensis orange1.1g043159m.g I 0.000
ORGLA02G0052000 Oryza glaberrima ORGLA02G0052000 I 0.000
ORGLA02G0104200 Oryza glaberrima ORGLA02G0104200 I 0.000
ORGLA06G0198800 Oryza glaberrima ORGLA06G0198800 I 0.000
ORUFI02G05790 Oryza rufipogon ORUFI02G05790 I 0.000
ORUFI02G11610 Oryza rufipogon ORUFI02G11610 I 0.000
ORUFI06G25410 Oryza rufipogon ORUFI06G25410 I 0.000
ORUFI12G20050 Oryza rufipogon ORUFI12G20050 I 0.000
OS02G0175100 Oryza sativa OS02G0175100 I 0.000
OS02G0266800 Oryza sativa OS02G0266800 D 0.000
OS06G0662200 Oryza sativa OS06G0662200 I 0.000
OS12G0601800 Oryza sativa OS12G0601800 I 0.000
Pavir.Aa03364 Panicum virgatum Pavir.Aa03364 I 0.000
Pavir.Ab00505 Panicum virgatum Pavir.Ab00505 I 0.000
Pavir.Ca02738 Panicum virgatum Pavir.Ca02738 I 0.000
Pavir.Db00496 Panicum virgatum Pavir.Db00496 I 0.000
PDK_20s1417191g003 Phoenix dactylifera PDK_20s1417191g003 I 0.000
PDK_20s1482361g001 Phoenix dactylifera PDK_20s1482361g001 I 0.000
PGSC0003DMG400001916 Solanum tuberosum PGSC0003DMG400001916 I 0.000
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I 0.000
PK05128.1 Cannabis sativa PK05128.1 D 0.000
PK09738.1 Cannabis sativa PK09738.1 I 0.000
PK11472.1 Cannabis sativa PK11472.1 I 0.000
Pm003522 Prunus mume Pm003522 I 0.000
Pm005087 Prunus mume Pm005087 I 0.000
Pm020231 Prunus mume Pm020231 I 0.000
POPTR_0002s04660 Populus trichocarpa POPTR_0002s04660 I 0.000
POPTR_0006s29250 Populus trichocarpa POPTR_0006s29250 I 0.000
POPTR_0008s11260 Populus trichocarpa POPTR_0008s11260 I 0.000
POPTR_0010s14530 Populus trichocarpa POPTR_0010s14530 I 0.000
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I 0.000
PRUPE_ppa005367mg Prunus persica PRUPE_ppa005367mg I 0.000
PRUPE_ppa005585mg Prunus persica PRUPE_ppa005585mg I 0.000
PRUPE_ppa007814mg Prunus persica PRUPE_ppa007814mg I 0.000
PRUPE_ppa011589mg Prunus persica PRUPE_ppa011589mg I 0.000
SapurV1A.0006s1330 Salix purpurea SapurV1A.0006s1330 I 0.000
SapurV1A.0060s0610 Salix purpurea SapurV1A.0060s0610 I 0.000
SapurV1A.0084s0340 Salix purpurea SapurV1A.0084s0340 I 0.000
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I 0.000
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I 0.000
Sb04g005020 Sorghum bicolor Sb04g005020 I 0.000
Sb08g020600 Sorghum bicolor Sb08g020600 I 0.000
Sb10g026450 Sorghum bicolor Sb10g026450 I 0.000
Si007043m.g Setaria italica Si007043m.g I 0.000
Si017778m.g Setaria italica Si017778m.g I 0.000
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I 0.000
Solyc04g005170.1 Solanum lycopersicum Solyc04g005170.1 I 0.000
Solyc08g022080.2 Solanum lycopersicum Solyc08g022080.2 I 0.000
TCM_004222 Theobroma cacao TCM_004222 I 0.000
TCM_026349 Theobroma cacao TCM_026349 I 0.000
Thhalv10004611m.g Eutrema salsugineum Thhalv10004611m.g I 0.000
VIT_01s0010g00930 Vitis vinifera VIT_01s0010g00930 I 0.000
ATBZIP9 Vitis vinifera VIT_04s0008g02750 I 0.000
VIT_07s0141g00170 Vitis vinifera VIT_07s0141g00170 I 0.000
BZO2H3 Vitis vinifera VIT_14s0030g02200 I 0.000