OBART03G06320 (Oryza barthii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OBART03G06320 T254962_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.812 0.812
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.812 0.812
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.812 0.812
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.792 0.792
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.792 0.792
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.792 0.792
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.729 0.729
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.729 0.729
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
Q8GT99_TOBAC
M11006_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_02 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.708 0.708
Q9SBQ1_PETHY
M11017_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PFG_01 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G06320.1 MADS box 29 76

Links

Other MADS box family TFs
Other Oryza barthii TFs

586 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AACERI_AaceriAAR026W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAR026W I
Aan_R000440 Calypte anna Aan_R000440 I
Afo_R001715 Aptenodytes forsteri Afo_R001715 I
AGOS_AAR026W Ashbya gossypii AGOS_AAR026W I
Alligator_sinensis_CCG000124.1 Alligator sinensis Alligator_sinensis_CCG000124.1 I
Brh_R002687 Buceros rhinoceros Brh_R002687 I
CANTEDRAFT_136140 Candida tenuis CANTEDRAFT_136140 I
CGI_10003963 Crassostrea gigas CGI_10003963 I
Cmyd_10005373 Chelonia mydas Cmyd_10005373 I
csin104163 Clonorchis sinensis csin104163 I
D915_09544 Fasciola hepatica D915_09544 I
DAPPUDRAFT_313324 Daphnia pulex DAPPUDRAFT_313324 I
DICSQDRAFT_40774 Dichomitus squalens DICSQDRAFT_40774 I
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I
Ecym_1257 Eremothecium cymbalariae Ecym_1257 I
HBP1 Anolis carolinensis ENSACAG00000015023 I
ENSAMEG00000013492 Ailuropoda melanoleuca ENSAMEG00000013492 I
ENSAMXG00000017678 Astyanax mexicanus ENSAMXG00000017678 I
ENSAPLG00000007110 Anas platyrhynchos ENSAPLG00000007110 I
HBP1 Bos taurus ENSBTAG00000005524 I
ENSBTAP00000044156-D1 Bos grunniens ENSBTAP00000044156-D1 I
HBP1 Canis familiaris ENSCAFG00000003939 I
HBP1 Callithrix jacchus ENSCJAG00000016260 I
HBP1 Cavia porcellus ENSCPOG00000002375 I
ENSCSAG00000011395 Chlorocebus sabaeus ENSCSAG00000011395 I
hbp1 Danio rerio ENSDARG00000028517 I
HBP1 Dasypus novemcinctus ENSDNOG00000004405 I
Hbp1 Dipodomys ordii ENSDORG00000010576 I
HBP1 Equus caballus ENSECAG00000020969 I
HBP1 Echinops telfairi ENSETEG00000018542 I
ENSFALG00000010259 Ficedula albicollis ENSFALG00000010259 I
HBP1 Felis catus ENSFCAG00000005858 I
HBP1 Homo sapiens ENSG00000105856 D
hbp1 Gasterosteus aculeatus ENSGACG00000010054 I
ENSGACG00000019192 Gasterosteus aculeatus ENSGACG00000019192 I
HBP1 Gallus gallus ENSGALG00000008050 I
HBP1 Gorilla gorilla ENSGGOG00000007788 I
ENSGMOG00000013782 Gadus morhua ENSGMOG00000013782 I
ENSLACG00000009119 Latimeria chalumnae ENSLACG00000009119 I
HBP1 Loxodonta africana ENSLAFG00000005317 I
ENSLOCG00000015822 Lepisosteus oculatus ENSLOCG00000015822 I
ENSMEUG00000011116 Macropus eugenii ENSMEUG00000011116 I
HBP1 Microcebus murinus ENSMICG00000012858 I
HBP1 Myotis lucifugus ENSMLUG00000012425 I
HBP1 Macaca mulatta ENSMMUG00000015409 I
HBP1 Monodelphis domestica ENSMODG00000016376 I
ENSMPUG00000018249 Mustela putorius furo ENSMPUG00000018249 I
Hbp1 Mus musculus ENSMUSG00000002996 D
ENSNLEG00000008761 Nomascus leucogenys ENSNLEG00000008761 I
HBP1 Ornithorhynchus anatinus ENSOANG00000003174 I
ENSOARG00000005055 Ovis aries ENSOARG00000005055 I
HBP1 Oryctolagus cuniculus ENSOCUG00000012758 I
HBP1 Otolemur garnettii ENSOGAG00000013102 I
ENSONIG00000008523 Oreochromis niloticus ENSONIG00000008523 I
ENSONIG00000011868 Oreochromis niloticus ENSONIG00000011868 I
hbp1 Oryzias latipes ENSORLG00000004396 I
ENSORLG00000009474 Oryzias latipes ENSORLG00000009474 I
ENSP00000420500 Macaca fascicularis ENSP00000420500 I
ENSPANG00000024385 Papio anubis ENSPANG00000024385 I
HBP1 Procavia capensis ENSPCAG00000014060 I
ENSPFOG00000003951 Poecilia formosa ENSPFOG00000003951 I
ENSPFOG00000012271 Poecilia formosa ENSPFOG00000012271 I
ENSPMAG00000002631 Petromyzon marinus ENSPMAG00000002631 I
ENSPPYG00000017898 Pongo abelii ENSPPYG00000017898 I
ENSPSIG00000012478 Pelodiscus sinensis ENSPSIG00000012478 I
HBP1 Pan troglodytes ENSPTRG00000019575 I
HBP1 Pteropus vampyrus ENSPVAG00000014543 I
Hbp1 Rattus norvegicus ENSRNOG00000008927 I
HBP1 Sorex araneus ENSSARG00000007731 I
ENSSHAG00000010948 Sarcophilus harrisii ENSSHAG00000010948 I
ENSSTOG00000013846 Ictidomys tridecemlineatus ENSSTOG00000013846 I
HBP1 Tupaia belangeri ENSTBEG00000007793 I
HBP1 Taeniopygia guttata ENSTGUG00000003100 I
ENSTNIG00000002023 Tetraodon nigroviridis ENSTNIG00000002023 I
hbp1 Tetraodon nigroviridis ENSTNIG00000016027 I
ENSTRUG00000011881 Takifugu rubripes ENSTRUG00000011881 I
hbp1 Takifugu rubripes ENSTRUG00000016990 I
ENSTSYG00000010057 Tarsius syrichta ENSTSYG00000010057 I
HBP1 Tursiops truncatus ENSTTRG00000006826 I
HBP1 Vicugna pacos ENSVPAG00000008629 I
ENSXMAG00000007586 Xiphophorus maculatus ENSXMAG00000007586 I
ENSXMAG00000016455 Xiphophorus maculatus ENSXMAG00000016455 I
e_gw.61.169.1 Branchiostoma floridae e_gw.61.169.1 I
e_gw.633.29.1 Branchiostoma floridae e_gw.633.29.1 I
GI22721 Drosophila mojavensis FBgn0145448 I
GL12097 Drosophila persimilis FBgn0149705 I
GA30228 Drosophila pseudoobscura FBgn0263363 I
GB51010 Apis mellifera GB51010 I
Gfo_R011321 Geospiza fortis Gfo_R011321 I
HelroG148167 Helobdella robusta HelroG148167 I
ISCW021979 Ixodes scapularis ISCW021979 I
L798_09303 Zootermopsis nevadensis L798_09303 I
ML040423a Mnemiopsis leidyi ML040423a I
Myotis_brandtii_HBP1_10033916 Myotis brandtii Myotis_brandtii_HBP1_10033916 I
NEMVEDRAFT_v1g120503 Nematostella vectensis NEMVEDRAFT_v1g120503 I
PHUM534240 Pediculus humanus PHUM534240 I
Pvit_03004 Pogona vitticeps Pvit_03004 I
SMAR013235 Strigamia maritima SMAR013235 I
Smp_148110 Schistosoma mansoni Smp_148110 I
SNAPOd2T00000335001 Oikopleura dioica SNAPOd2T00000335001 I
T265_01499 Opisthorchis viverrini T265_01499 I
Tal_R010197 Tyto alba Tal_R010197 I
tetur23g00840 Tetranychus urticae tetur23g00840 I
TriadG55419 Trichoplax adhaerens TriadG55419 I
hbp1.S Xenopus laevis XB-GENE-17342930 I
hbp1 Xenopus tropicalis XB-GENE-950343 I
hbp1.L Xenopus laevis XB-GENE-950348 I
XP_002155149.1 Hydra magnipapillata XP_002155149.1 I
ZBAI_00389 Zygosaccharomyces bailii ZBAI_00389 I
ZBAI_05541 Zygosaccharomyces bailii ZBAI_05541 I
ZYRO0C16214g Zygosaccharomyces rouxii ZYRO0C16214g I