CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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hbp1
(
Tetraodon nigroviridis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSTNIG00000016027
T329278_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hbp1
M00194_2.00
Mus musculus
NNNDDNNN
NNNHHNNN
PBM
Badis et al.(2009)
Hbp1_2241
0.741
0.956
HBP1
M11299_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HBP1_Q2
0.741
0.956
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000019116
Sox
374
441
CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDKWKKMKSEERRMYTMEAKALAEEQKRLNPDC
Links
Other
Sox
family TFs
Other
Tetraodon nigroviridis
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000013492
Ailuropoda melanoleuca
ENSAMEG00000013492
I
0.741
ENSAMXG00000017678
Astyanax mexicanus
ENSAMXG00000017678
I
0.741
ENSAPLG00000007110
Anas platyrhynchos
ENSAPLG00000007110
I
0.741
HBP1
Bos taurus
ENSBTAG00000005524
I
0.741
HBP1
Canis familiaris
ENSCAFG00000003939
I
0.741
HBP1
Callithrix jacchus
ENSCJAG00000016260
I
0.741
HBP1
Cavia porcellus
ENSCPOG00000002375
I
0.741
ENSCSAG00000011395
Chlorocebus sabaeus
ENSCSAG00000011395
I
0.741
hbp1
Danio rerio
ENSDARG00000028517
I
0.741
HBP1
Dasypus novemcinctus
ENSDNOG00000004405
I
0.741
HBP1
Equus caballus
ENSECAG00000020969
I
0.741
ENSFALG00000010259
Ficedula albicollis
ENSFALG00000010259
I
0.741
HBP1
Felis catus
ENSFCAG00000005858
I
0.741
HBP1
Homo sapiens
ENSG00000105856
D
0.741
HBP1
Gallus gallus
ENSGALG00000008050
I
0.741
HBP1
Gorilla gorilla
ENSGGOG00000007788
I
0.741
ENSGMOG00000013782
Gadus morhua
ENSGMOG00000013782
I
0.741
HBP1
Loxodonta africana
ENSLAFG00000005317
I
0.741
ENSLOCG00000015822
Lepisosteus oculatus
ENSLOCG00000015822
I
0.741
HBP1
Meleagris gallopavo
ENSMGAG00000006880
I
0.741
HBP1
Microcebus murinus
ENSMICG00000012858
I
0.741
HBP1
Myotis lucifugus
ENSMLUG00000012425
I
0.741
HBP1
Macaca mulatta
ENSMMUG00000015409
I
0.741
HBP1
Monodelphis domestica
ENSMODG00000016376
I
0.741
ENSMPUG00000018249
Mustela putorius furo
ENSMPUG00000018249
I
0.741
Hbp1
Mus musculus
ENSMUSG00000002996
D
0.741
ENSNLEG00000008761
Nomascus leucogenys
ENSNLEG00000008761
I
0.741
ENSOARG00000005055
Ovis aries
ENSOARG00000005055
I
0.741
HBP1
Oryctolagus cuniculus
ENSOCUG00000012758
I
0.741
HBP1
Otolemur garnettii
ENSOGAG00000013102
I
0.741
ENSONIG00000008523
Oreochromis niloticus
ENSONIG00000008523
I
0.741
ENSPANG00000024385
Papio anubis
ENSPANG00000024385
I
0.741
HBP1
Procavia capensis
ENSPCAG00000014060
I
0.741
ENSPFOG00000003951
Poecilia formosa
ENSPFOG00000003951
I
0.741
ENSPPYG00000017898
Pongo abelii
ENSPPYG00000017898
I
0.741
ENSPSIG00000012478
Pelodiscus sinensis
ENSPSIG00000012478
I
0.741
HBP1
Pan troglodytes
ENSPTRG00000019575
I
0.741
HBP1
Pteropus vampyrus
ENSPVAG00000014543
I
0.741
Hbp1
Rattus norvegicus
ENSRNOG00000008927
I
0.741
ENSSHAG00000010948
Sarcophilus harrisii
ENSSHAG00000010948
I
0.741
ENSSTOG00000013846
Ictidomys tridecemlineatus
ENSSTOG00000013846
I
0.741
HBP1
Tupaia belangeri
ENSTBEG00000007793
I
0.741
HBP1
Taeniopygia guttata
ENSTGUG00000003100
I
0.741
hbp1
Takifugu rubripes
ENSTRUG00000016990
I
0.741
HBP1
Tursiops truncatus
ENSTTRG00000006826
I
0.741
HBP1
Vicugna pacos
ENSVPAG00000008629
I
0.741
ENSXMAG00000016455
Xiphophorus maculatus
ENSXMAG00000016455
I
0.741
Aan_R000440
Calypte anna
Aan_R000440
I
0.741
Afo_R001715
Aptenodytes forsteri
Afo_R001715
I
0.741
Alligator_sinensis_CCG000124.1
Alligator sinensis
Alligator_sinensis_CCG000124.1
I
0.741
Brh_R002687
Buceros rhinoceros
Brh_R002687
I
0.741
Cmyd_10005373
Chelonia mydas
Cmyd_10005373
I
0.741
ENSBTAP00000044156-D1
Bos grunniens
ENSBTAP00000044156-D1
I
0.741
ENSP00000420500
Macaca fascicularis
ENSP00000420500
I
0.741
Gfo_R011321
Geospiza fortis
Gfo_R011321
I
0.741
Myotis_brandtii_HBP1_10033916
Myotis brandtii
Myotis_brandtii_HBP1_10033916
I
0.741
Tal_R010197
Tyto alba
Tal_R010197
I
0.741
hbp1
Oryzias latipes
ENSORLG00000004396
I
0.739
HBP1
Anolis carolinensis
ENSACAG00000015023
I
0.735
ENSLACG00000009119
Latimeria chalumnae
ENSLACG00000009119
I
0.735
Pvit_03004
Pogona vitticeps
Pvit_03004
I
0.735
hbp1.S
Xenopus laevis
XB-GENE-17342930
I
0.735
hbp1
Xenopus tropicalis
XB-GENE-950343
I
0.735
hbp1.L
Xenopus laevis
XB-GENE-950348
I
0.735
HBP1
Ornithorhynchus anatinus
ENSOANG00000003174
I
0.728
ENSPFOG00000012271
Poecilia formosa
ENSPFOG00000012271
I
0.722
ENSXMAG00000007586
Xiphophorus maculatus
ENSXMAG00000007586
I
0.722
ENSONIG00000011868
Oreochromis niloticus
ENSONIG00000011868
I
0.716
SMAR013235
Strigamia maritima
SMAR013235
I
0.699
ENSTNIG00000002023
Tetraodon nigroviridis
ENSTNIG00000002023
I
0.687
ENSTRUG00000011881
Takifugu rubripes
ENSTRUG00000011881
I
0.684
ENSGACG00000019192
Gasterosteus aculeatus
ENSGACG00000019192
I
0.671
ENSORLG00000009474
Oryzias latipes
ENSORLG00000009474
I
0.655
hbp1
Gasterosteus aculeatus
ENSGACG00000010054
I
0.650
e_gw.61.169.1
Branchiostoma floridae
e_gw.61.169.1
I
0.639
e_gw.633.29.1
Branchiostoma floridae
e_gw.633.29.1
I
0.639
XP_002155149.1
Hydra magnipapillata
XP_002155149.1
I
0.611
ENSPMAG00000002631
Petromyzon marinus
ENSPMAG00000002631
I
0.610
NEMVEDRAFT_v1g120503
Nematostella vectensis
NEMVEDRAFT_v1g120503
I
0.604
TriadG55419
Trichoplax adhaerens
TriadG55419
I
0.603
ISCW021979
Ixodes scapularis
ISCW021979
I
0.568
CGI_10003963
Crassostrea gigas
CGI_10003963
I
0.566
DAPPUDRAFT_313324
Daphnia pulex
DAPPUDRAFT_313324
I
0.551
PHUM534240
Pediculus humanus
PHUM534240
I
0.549
ML040423a
Mnemiopsis leidyi
ML040423a
I
0.544
L798_09303
Zootermopsis nevadensis
L798_09303
I
0.526
SNAPOd2T00000335001
Oikopleura dioica
SNAPOd2T00000335001
I
0.457
DICSQDRAFT_40774
Dichomitus squalens
DICSQDRAFT_40774
I
0.443
ECPE_0001539401
Echinostoma caproni
ECPE_0001539401
I
0.443
GB51010
Apis mellifera
GB51010
I
0.438
ZBAI_00389
Zygosaccharomyces bailii
ZBAI_00389
I
0.435
ZBAI_05541
Zygosaccharomyces bailii
ZBAI_05541
I
0.435
ZYRO0C16214g
Zygosaccharomyces rouxii
ZYRO0C16214g
I
0.435
D915_09544
Fasciola hepatica
D915_09544
I
0.434
GI22721
Drosophila mojavensis
FBgn0145448
I
0.432
csin104163
Clonorchis sinensis
csin104163
I
0.432
T265_01499
Opisthorchis viverrini
T265_01499
I
0.432
HelroG148167
Helobdella robusta
HelroG148167
I
0.431
AGOS_AAR026W
Ashbya gossypii
AGOS_AAR026W
I
0.429
tetur23g00840
Tetranychus urticae
tetur23g00840
I
0.428
ENSTSYG00000010057
Tarsius syrichta
ENSTSYG00000010057
I
0.425
GL12097
Drosophila persimilis
FBgn0149705
I
0.425
GA30228
Drosophila pseudoobscura
FBgn0263363
I
0.425
AACERI_AaceriAAR026W
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriAAR026W
I
0.420
Ecym_1257
Eremothecium cymbalariae
Ecym_1257
I
0.420
Smp_148110
Schistosoma mansoni
Smp_148110
I
0.417
CANTEDRAFT_136140
Candida tenuis
CANTEDRAFT_136140
I
0.415