DAPPUDRAFT_313324 (Daphnia pulex)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 DAPPUDRAFT_313324 T327330_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hbp1
M00194_2.00 		Mus musculus
NNNDDNNN
NNNHHNNN		 PBM
Badis et al.(2009)
Hbp1_2241 		0.551 0.603
HBP1
M11299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HBP1_Q2 		0.551 0.603
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.473 0.338
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.473 0.338
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.473 0.338
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.473 0.338
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.473 0.338
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.426 0.353
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX86246 Sox 344 411

Links

Other Sox family TFs
Other Daphnia pulex TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L798_09303 Zootermopsis nevadensis L798_09303 I 0.600
ISCW021979 Ixodes scapularis ISCW021979 I 0.582
ML040423a Mnemiopsis leidyi ML040423a I 0.580
HBP1 Ornithorhynchus anatinus ENSOANG00000003174 I 0.558
ENSLACG00000009119 Latimeria chalumnae ENSLACG00000009119 I 0.557
SMAR013235 Strigamia maritima SMAR013235 I 0.553
HBP1 Anolis carolinensis ENSACAG00000015023 I 0.551
ENSAMEG00000013492 Ailuropoda melanoleuca ENSAMEG00000013492 I 0.551
ENSAMXG00000017678 Astyanax mexicanus ENSAMXG00000017678 I 0.551
ENSAPLG00000007110 Anas platyrhynchos ENSAPLG00000007110 I 0.551
HBP1 Bos taurus ENSBTAG00000005524 I 0.551
HBP1 Canis familiaris ENSCAFG00000003939 I 0.551
HBP1 Callithrix jacchus ENSCJAG00000016260 I 0.551
HBP1 Cavia porcellus ENSCPOG00000002375 I 0.551
ENSCSAG00000011395 Chlorocebus sabaeus ENSCSAG00000011395 I 0.551
hbp1 Danio rerio ENSDARG00000028517 I 0.551
HBP1 Dasypus novemcinctus ENSDNOG00000004405 I 0.551
HBP1 Equus caballus ENSECAG00000020969 I 0.551
ENSFALG00000010259 Ficedula albicollis ENSFALG00000010259 I 0.551
HBP1 Felis catus ENSFCAG00000005858 I 0.551
HBP1 Homo sapiens ENSG00000105856 D 0.551
HBP1 Gallus gallus ENSGALG00000008050 I 0.551
HBP1 Gorilla gorilla ENSGGOG00000007788 I 0.551
ENSGMOG00000013782 Gadus morhua ENSGMOG00000013782 I 0.551
HBP1 Loxodonta africana ENSLAFG00000005317 I 0.551
ENSLOCG00000015822 Lepisosteus oculatus ENSLOCG00000015822 I 0.551
HBP1 Meleagris gallopavo ENSMGAG00000006880 I 0.551
HBP1 Microcebus murinus ENSMICG00000012858 I 0.551
HBP1 Myotis lucifugus ENSMLUG00000012425 I 0.551
HBP1 Macaca mulatta ENSMMUG00000015409 I 0.551
HBP1 Monodelphis domestica ENSMODG00000016376 I 0.551
ENSMPUG00000018249 Mustela putorius furo ENSMPUG00000018249 I 0.551
Hbp1 Mus musculus ENSMUSG00000002996 D 0.551
ENSNLEG00000008761 Nomascus leucogenys ENSNLEG00000008761 I 0.551
ENSOARG00000005055 Ovis aries ENSOARG00000005055 I 0.551
HBP1 Oryctolagus cuniculus ENSOCUG00000012758 I 0.551
HBP1 Otolemur garnettii ENSOGAG00000013102 I 0.551
ENSONIG00000008523 Oreochromis niloticus ENSONIG00000008523 I 0.551
ENSPANG00000024385 Papio anubis ENSPANG00000024385 I 0.551
HBP1 Procavia capensis ENSPCAG00000014060 I 0.551
ENSPFOG00000003951 Poecilia formosa ENSPFOG00000003951 I 0.551
ENSPPYG00000017898 Pongo abelii ENSPPYG00000017898 I 0.551
ENSPSIG00000012478 Pelodiscus sinensis ENSPSIG00000012478 I 0.551
HBP1 Pan troglodytes ENSPTRG00000019575 I 0.551
HBP1 Pteropus vampyrus ENSPVAG00000014543 I 0.551
Hbp1 Rattus norvegicus ENSRNOG00000008927 I 0.551
ENSSHAG00000010948 Sarcophilus harrisii ENSSHAG00000010948 I 0.551
ENSSTOG00000013846 Ictidomys tridecemlineatus ENSSTOG00000013846 I 0.551
HBP1 Tupaia belangeri ENSTBEG00000007793 I 0.551
HBP1 Taeniopygia guttata ENSTGUG00000003100 I 0.551
hbp1 Tetraodon nigroviridis ENSTNIG00000016027 I 0.551
hbp1 Takifugu rubripes ENSTRUG00000016990 I 0.551
HBP1 Tursiops truncatus ENSTTRG00000006826 I 0.551
HBP1 Vicugna pacos ENSVPAG00000008629 I 0.551
ENSXMAG00000016455 Xiphophorus maculatus ENSXMAG00000016455 I 0.551
Aan_R000440 Calypte anna Aan_R000440 I 0.551
Afo_R001715 Aptenodytes forsteri Afo_R001715 I 0.551
Alligator_sinensis_CCG000124.1 Alligator sinensis Alligator_sinensis_CCG000124.1 I 0.551
Brh_R002687 Buceros rhinoceros Brh_R002687 I 0.551
Cmyd_10005373 Chelonia mydas Cmyd_10005373 I 0.551
ENSBTAP00000044156-D1 Bos grunniens ENSBTAP00000044156-D1 I 0.551
ENSP00000420500 Macaca fascicularis ENSP00000420500 I 0.551
Gfo_R011321 Geospiza fortis Gfo_R011321 I 0.551
Myotis_brandtii_HBP1_10033916 Myotis brandtii Myotis_brandtii_HBP1_10033916 I 0.551
Pvit_03004 Pogona vitticeps Pvit_03004 I 0.551
Tal_R010197 Tyto alba Tal_R010197 I 0.551
hbp1.S Xenopus laevis XB-GENE-17342930 I 0.551
hbp1 Xenopus tropicalis XB-GENE-950343 I 0.551
hbp1.L Xenopus laevis XB-GENE-950348 I 0.551
hbp1 Oryzias latipes ENSORLG00000004396 I 0.549
PHUM534240 Pediculus humanus PHUM534240 I 0.546
ENSONIG00000011868 Oreochromis niloticus ENSONIG00000011868 I 0.545
ENSTRUG00000011881 Takifugu rubripes ENSTRUG00000011881 I 0.545
ENSORLG00000009474 Oryzias latipes ENSORLG00000009474 I 0.542
ENSPFOG00000012271 Poecilia formosa ENSPFOG00000012271 I 0.538
ENSXMAG00000007586 Xiphophorus maculatus ENSXMAG00000007586 I 0.538
TriadG55419 Trichoplax adhaerens TriadG55419 I 0.538
CGI_10003963 Crassostrea gigas CGI_10003963 I 0.533
e_gw.61.169.1 Branchiostoma floridae e_gw.61.169.1 I 0.520
e_gw.633.29.1 Branchiostoma floridae e_gw.633.29.1 I 0.520
NEMVEDRAFT_v1g120503 Nematostella vectensis NEMVEDRAFT_v1g120503 I 0.518
ENSTNIG00000002023 Tetraodon nigroviridis ENSTNIG00000002023 I 0.516
XP_002155149.1 Hydra magnipapillata XP_002155149.1 I 0.516
ENSPMAG00000002631 Petromyzon marinus ENSPMAG00000002631 I 0.508
ENSGACG00000019192 Gasterosteus aculeatus ENSGACG00000019192 I 0.487
GB51010 Apis mellifera GB51010 I 0.481
KNAG_0H00720 Kazachstania naganishii KNAG_0H00720 I 0.473
SU7_3656 Saccharomyces arboricola SU7_3656 I 0.473
ROX1 Saccharomyces cerevisiae YPR065W D 0.473
22516_YPR065W Saccharomyces mikatae 22516_YPR065W I 0.473
23192_YPR065W Saccharomyces paradoxus 23192_YPR065W I 0.473
SAKL0B07656g Lachancea kluyveri SAKL0B07656g I 0.467
hbp1 Gasterosteus aculeatus ENSGACG00000010054 I 0.466
NCAS_0A11120 Naumovozyma castellii NCAS_0A11120 I 0.465
Scas_Contig667.28 Saccharomyces castellii Scas_Contig667.28 I 0.465
AGAP003896 Anopheles gambiae AGAP003896 I 0.462
AGAP003897 Anopheles gambiae AGAP003897 I 0.462
PHUM605170 Pediculus humanus PHUM605170 I 0.462
AARA009897 Anopheles arabiensis AARA009897 I 0.462
ACHR004909 Anopheles christyi ACHR004909 I 0.462
ACOM034716 Anopheles coluzzii ACOM034716 I 0.462
AEPI004245 Anopheles epiroticus AEPI004245 I 0.462
AQUA002577 Anopheles quadriannulatus AQUA002577 I 0.462
SNAPOd2T00000335001 Oikopleura dioica SNAPOd2T00000335001 I 0.458
AMEC018835 Anopheles melas AMEC018835 I 0.455
GALMADRAFT_340474 Galerina marginata GALMADRAFT_340474 I 0.453
PFL1_03871 Pseudozyma flocculosa PFL1_03871 I 0.451
GI22721 Drosophila mojavensis FBgn0145448 I 0.450
GL12097 Drosophila persimilis FBgn0149705 I 0.450
GA30228 Drosophila pseudoobscura FBgn0263363 I 0.450
NV14822 Nasonia vitripennis NV14822 I 0.447
TDEL_0C04960 Torulaspora delbrueckii TDEL_0C04960 I 0.446
JL09_g4172 Pichia kudriavzevii JL09_g4172 I 0.445
CaO19.2823 Candida albicans CaO19.2823 I 0.442
YQE_11555 Dendroctonus ponderosae YQE_11555 I 0.441
MELLADRAFT_111305 Melampsora laricipopulina MELLADRAFT_111305 I 0.439
SMAR001063 Strigamia maritima SMAR001063 I 0.439
ZYRO0C16214g Zygosaccharomyces rouxii ZYRO0C16214g I 0.434
SPER_0001384501 Spirometra erinaceieuropaei SPER_0001384501 I 0.434
SSLN_0001637801 Schistocephalus solidus SSLN_0001637801 I 0.434
fgenesh1_pg.scaffold_35000054 Monosiga brevicollis fgenesh1_pg.scaffold_35000054 I 0.433
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I 0.433
SMAR004984 Strigamia maritima SMAR004984 I 0.432
tetur23g00840 Tetranychus urticae tetur23g00840 I 0.432
HelroG148167 Helobdella robusta HelroG148167 I 0.430
NEMVEDRAFT_v1g122926 Nematostella vectensis NEMVEDRAFT_v1g122926 I 0.428
AMEM012787 Anopheles merus AMEM012787 I 0.428
GSTUM_00001090001 Tuber melanosporum GSTUM_00001090001 I 0.427
ZBAI_00389 Zygosaccharomyces bailii ZBAI_00389 I 0.427
ZBAI_05541 Zygosaccharomyces bailii ZBAI_05541 I 0.427
RSKR_0000077800 Rhabditophanes kr3021 RSKR_0000077800 I 0.427
GF17645 Drosophila ananassae FBgn0094663 I 0.426
GG23823 Drosophila erecta FBgn0115962 I 0.426
GH23608 Drosophila grimshawi FBgn0131065 I 0.426
GM23104 Drosophila sechellia FBgn0177972 I 0.426
GD19345 Drosophila simulans FBgn0190847 I 0.426
GJ23448 Drosophila virilis FBgn0210547 I 0.426
GK10919 Drosophila willistoni FBgn0212930 I 0.426
GE25659 Drosophila yakuba FBgn0242721 I 0.426
cic Drosophila melanogaster FBgn0262582 D 0.426
GALMADRAFT_213842 Galerina marginata GALMADRAFT_213842 I 0.426
LCUP009387 Lucilia cuprina LCUP009387 I 0.426
MDOA004531 Musca domestica MDOA004531 I 0.426
CBG00068 Caenorhabditis briggsae CBG00068 I 0.424
csin104163 Clonorchis sinensis csin104163 I 0.424
D915_09544 Fasciola hepatica D915_09544 I 0.424
T265_01499 Opisthorchis viverrini T265_01499 I 0.424
SMU15015648 Schmidtea mediterranea SMU15015648 I 0.423
DILT_0001026601 Diphyllobothrium latum DILT_0001026601 I 0.423
SSLN_0000478001 Schistocephalus solidus SSLN_0000478001 I 0.423
L798_09327 Zootermopsis nevadensis L798_09327 I 0.422
NEMVEDRAFT_v1g19525 Nematostella vectensis NEMVEDRAFT_v1g19525 I 0.421
HPODL_00225 Ogataea parapolymorpha HPODL_00225 I 0.420
KAFR_0H00950 Kazachstania africana KAFR_0H00950 I 0.420
KUCA_T00002521001 Kuraishia capsulata KUCA_T00002521001 I 0.420
PAS_chr2-1_0017 Komagataella pastoris PAS_chr2-1_0017 I 0.420
gw1.6.301.1 Phycomyces blakesleeanus gw1.6.301.1 N 0.420
XP_002490896.1 Pichia pastoris XP_002490896.1 I 0.420
PGUG_05440 Candida guilliermondii PGUG_05440 I 0.418
KAFR_0G02830 Kazachstania africana KAFR_0G02830 I 0.418
PGUG_05440 Meyerozyma guilliermondii PGUG_05440 I 0.418
M413DRAFT_289523 Hebeloma cylindrosporum M413DRAFT_289523 I 0.417
Moror_2734 Moniliophthora roreri Moror_2734 I 0.417
NDAI_0E03570 Naumovozyma dairenensis NDAI_0E03570 I 0.416
L798_04766 Zootermopsis nevadensis L798_04766 I 0.415
csin105999 Clonorchis sinensis csin105999 I 0.415
T265_06704 Opisthorchis viverrini T265_06704 I 0.415