Cmyd_10009988 (Chelonia mydas)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cmyd_10009988 T256983_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.897 0.897
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.897 0.897
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.897 0.897
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.897 0.897
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.897 0.897
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.897 0.897
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.897 0.897
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.897 0.897
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.897 0.897
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.897 0.897
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.897 0.897
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.897 0.897
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.897 0.897
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.897 0.897
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.897 0.897
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.897 0.897
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.897 0.897
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.897 0.897
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.897 0.897
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.897 0.897
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.897 0.897
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.897 0.897
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.897 0.897
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.862 0.862
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.862 0.862
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.793 0.793
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.759 0.759
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.759 0.759
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.759 0.759
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.759 0.759
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.759 0.759
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.759 0.759
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10009988 MADS box 1098 1126

Links

Other MADS box family TFs
Other Chelonia mydas TFs

141 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008720 Aedes aegypti AAEL008720 I 0.862
AAEL010926 Aedes aegypti AAEL010926 I 0.862
AALB009948 Anopheles albimanus AALB009948 I 0.862
Aan_R005414 Calypte anna Aan_R005414 I 0.963
AARA006325 Anopheles arabiensis AARA006325 I 0.893
AATE011966 Anopheles atroparvus AATE011966 I 0.862
ACEP12187 Atta cephalotes ACEP12187 I 0.862
ACHR000964 Anopheles christyi ACHR000964 I 0.926
ACOM041693 Anopheles coluzzii ACOM041693 I 0.862
ACUA004576 Anopheles culicifacies ACUA004576 I 0.862
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.862
ADAC008363 Anopheles darlingi ADAC008363 I 0.926
ADIR000346 Anopheles dirus ADIR000346 I 0.926
AEPI007010 Anopheles epiroticus AEPI007010 I 0.862
AFAF013563 Anopheles farauti AFAF013563 I 0.893
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 0.963
AFUN006147 Anopheles funestus AFUN006147 I 0.926
AGAP010512 Anopheles gambiae AGAP010512 I 0.862
AMIN001258 Anopheles minimus AMIN001258 I 0.862
ANCDUO_04431 Ancylostoma duodenale ANCDUO_04431 I 0.828
AQUA001308 Anopheles quadriannulatus AQUA001308 I 0.862
ASIS007770 Anopheles sinensis ASIS007770 I 0.926
ASIS013674 Anopheles sinensis ASIS013674 N 0.931
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.926
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.793
BGIBMGA001384 Bombyx mori BGIBMGA001384 I 0.897
Brh_R011000 Buceros rhinoceros Brh_R011000 I 1.000
BXY_0217000 Bursaphelenchus xylophilus BXY_0217000 I 0.793
CAGL0I10769g Candida glabrata CAGL0I10769g I 0.724
CANTEDRAFT_132918 Candida tenuis CANTEDRAFT_132918 I 0.793
CFIO01_12657 Colletotrichum fioriniae CFIO01_12657 I 0.793
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.862
CH063_12904 Colletotrichum higginsianum CH063_12904 I 0.793
CJA08385 Caenorhabditis japonica CJA08385 I 0.793
CLEC013390 Cimex lectularius CLEC013390 I 0.893
Cob_05053 Colletotrichum orbiculare Cob_05053 I 0.793
CPIJ008335 Culex quinquefasciatus CPIJ008335 I 0.758
CpipJ_CPIJ008335 Culex pipiens CpipJ_CPIJ008335 I 0.758
CSUB01_05290 Colletotrichum sublineola CSUB01_05290 I 0.793
D917_02561 Trichinella nativa D917_02561 I 0.862
D918_07967 Trichuris suis D918_07967 I 0.862
DACRYDRAFT_57073 Dacryopinax sp DACRYDRAFT_57073 I 0.828
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.862
srfB Dictyostelium discoideum DDB_G0282835 I 0.862
DI09_81p70 Microsporidia sp DI09_81p70 I 0.828
E5Q_02524 Mixia osmundae E5Q_02524 I 0.828
EFV60876 Trichinella spiralis EFV60876 I 0.862
SRF Cavia porcellus ENSCPOG00000022327 I 0.963
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.793
SRF Erinaceus europaeus ENSEEUG00000005614 I 0.923
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 0.963
SRF Gorilla gorilla ENSGGOG00000006293 I 1.000
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 1.000
SRF Loxodonta africana ENSLAFG00000010278 I 0.963
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 0.963
ENSOARG00000005757 Ovis aries ENSOARG00000005757 I 0.897
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 1.000
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.867
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.897
SRF Sorex araneus ENSSARG00000003401 I 0.923
SRF Taeniopygia guttata ENSTGUG00000004738 I 0.963
SRF Vicugna pacos ENSVPAG00000008912 I 1.000
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.828
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.828
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.828
e_gw1.6.1281.1 Mucor circinelloides e_gw1.6.1281.1 I 0.828
bs Drosophila melanogaster FBgn0004101 D 0.862
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.862
GF11392 Drosophila ananassae FBgn0088432 I 0.862
GG22961 Drosophila erecta FBgn0115118 I 0.862
GH20989 Drosophila grimshawi FBgn0128451 I 0.862
GI21322 Drosophila mojavensis FBgn0144052 I 0.862
GL20046 Drosophila persimilis FBgn0157643 I 0.862
GM11854 Drosophila sechellia FBgn0166795 I 0.862
GD11852 Drosophila simulans FBgn0183591 I 0.862
GJ21595 Drosophila virilis FBgn0208714 I 0.862
GK22205 Drosophila willistoni FBgn0224190 I 0.862
GE14398 Drosophila yakuba FBgn0232006 I 0.862
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.793
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.862
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.862
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.828
GB47234 Apis mellifera GB47234 I 0.862
Gfo_R009695 Geospiza fortis Gfo_R009695 I 0.963
GGTG_11623 Gaeumannomyces graminis GGTG_11623 I 0.793
GLOINDRAFT_82941 Rhizophagus irregularis GLOINDRAFT_82941 I 0.828
GLOTRDRAFT_42980 Gloeophyllum trabeum GLOTRDRAFT_42980 I 0.828
GLRG_02553 Colletotrichum graminicola GLRG_02553 I 0.793
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.828
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.828
H311_03229 Anncaliia algerae H311_03229 I 0.724
H311_03668 Anncaliia algerae H311_03668 I 0.724
Hba_21368 Heterorhabditis bacteriophora Hba_21368 I 0.857
HelroG137972 Helobdella robusta HelroG137972 I 0.759
HHAL001485-PA Halyomorpha halys HHAL001485-PA I 0.862
HMEL017830 Heliconius melpomene HMEL017830 I 0.862
HPLM_0000743501 Haemonchus placei HPLM_0000743501 I 0.828
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.862
ISCW019966 Ixodes scapularis ISCW019966 I 0.862
J056_002827 Wallemia ichthyophaga J056_002827 I 0.759
L798_08800 Zootermopsis nevadensis L798_08800 I 0.862
LCUP011663 Lucilia cuprina LCUP011663 I 0.862
LLOJ005985 Lutzomyia longipalpis LLOJ005985 I 0.867
MAPG_02274 Magnaporthe poae MAPG_02274 I 0.793
MCINX015635 Melitaea cinxia MCINX015635 I 0.893
MDOA002443 Musca domestica MDOA002443 I 0.862
MESCA001358 Megaselia scalaris MESCA001358 I 0.926
MGG_02773 Magnaporthe oryzae MGG_02773 I 0.793
MVLG_04297 Microbotryum violaceum MVLG_04297 I 0.793
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I 0.839
NCAS_0H03140 Naumovozyma castellii NCAS_0H03140 I 0.724
NCER_102270 Nosema ceranae NCER_102270 I 0.724
NV18787 Nasonia vitripennis NV18787 I 0.862
O9G_005180 Rozella allomycis O9G_005180 I 0.929
Ogr17973 Ophisaurus gracilis Ogr17973 I 0.839
PAXRUDRAFT_829045 Paxillus rubicundulus PAXRUDRAFT_829045 I 0.828
PredSwiss_CON2346.1 Pneumocystis carinii PredSwiss_CON2346.1 I 0.793
PSEUBRA_SCAF3g03688 Pseudozyma brasiliensis PSEUBRA_SCAF3g03688 I 0.724
RO3G_00948 Rhizopus oryzae RO3G_00948 I 0.828
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.828
RO3G_07165 Rhizopus oryzae RO3G_07165 I 0.828
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.828
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.828
SAKL0B11704g Lachancea kluyveri SAKL0B11704g I 0.724
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.862
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.862
Scas_Contig649.23 Saccharomyces castellii Scas_Contig649.23 I 0.724
SINV23954 Solenopsis invicta SINV23954 I 0.926
SLOPH_1335 Spraguea lophii SLOPH_1335 I 0.724
SMAR003014 Strigamia maritima SMAR003014 I 0.862
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.793
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.793
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.897
sr10299 Sporisorium reilianum sr10299 I 0.759
TC004911 Tribolium castaneum TC004911 I 0.862
TELCIR_03792 Teladorsagia circumcincta TELCIR_03792 I 0.857
TELCIR_12851 Teladorsagia circumcincta TELCIR_12851 I 0.889
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.862
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.862
VDAG_01770 Verticillium dahliae VDAG_01770 I 0.793
WALSEDRAFT_9958 Wallemia sebi WALSEDRAFT_9958 I 0.759