Pm003257 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm003257 T257025_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm003257 MADS box 10 57

Links

Other MADS box family TFs
Other Prunus mume TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R001981 Aptenodytes forsteri Afo_R001981 I
Alligator_sinensis_CCG003696.1 Alligator sinensis Alligator_sinensis_CCG003696.1 I
Alligator_sinensis_CCG004564.1 Alligator sinensis Alligator_sinensis_CCG004564.1 I
Alligator_sinensis_CCG015719.1 Alligator sinensis Alligator_sinensis_CCG015719.1 I
Cmyd_10002838 Chelonia mydas Cmyd_10002838 I
Cmyd_10010684 Chelonia mydas Cmyd_10010684 I
IRF6 Anolis carolinensis ENSACAG00000005931 I
ENSAMEG00000017984 Ailuropoda melanoleuca ENSAMEG00000017984 I
ENSAMXG00000004616 Astyanax mexicanus ENSAMXG00000004616 I
ENSAPLG00000009319 Anas platyrhynchos ENSAPLG00000009319 I
IRF6 Bos taurus ENSBTAG00000002849 I
IRF6 Canis familiaris ENSCAFG00000011971 I
IRF6 Choloepus hoffmanni ENSCHOG00000010399 I
IRF6 Callithrix jacchus ENSCJAG00000015032 I
IRF6 Cavia porcellus ENSCPOG00000023829 I
ENSCSAG00000015263 Chlorocebus sabaeus ENSCSAG00000015263 I
irf5 Danio rerio ENSDARG00000045681 I
irf6 Danio rerio ENSDARG00000101986 I
IRF6 Dasypus novemcinctus ENSDNOG00000001694 I
Irf6 Dipodomys ordii ENSDORG00000008891 I
IRF6 Equus caballus ENSECAG00000007482 I
IRF6 Echinops telfairi ENSETEG00000008368 I
IRF6 Felis catus ENSFCAG00000015138 I
IRF6 Homo sapiens ENSG00000117595 D
IRF5 Homo sapiens ENSG00000128604 D
irf5 Gasterosteus aculeatus ENSGACG00000000695 I
irf6 Gasterosteus aculeatus ENSGACG00000000990 I
IRF6 Gallus gallus ENSGALG00000001405 D
IRF6 Gorilla gorilla ENSGGOG00000006214 I
ENSGMOG00000007264 Gadus morhua ENSGMOG00000007264 I
ENSGMOG00000007988 Gadus morhua ENSGMOG00000007988 I
ENSLACG00000005750 Latimeria chalumnae ENSLACG00000005750 I
ENSLACG00000018600 Latimeria chalumnae ENSLACG00000018600 I
IRF6 Loxodonta africana ENSLAFG00000001374 I
ENSLOCG00000011297 Lepisosteus oculatus ENSLOCG00000011297 I
ENSLOCG00000015563 Lepisosteus oculatus ENSLOCG00000015563 I
ENSMEUG00000002435 Macropus eugenii ENSMEUG00000002435 I
ENSMEUG00000014941 Macropus eugenii ENSMEUG00000014941 I
IRF6 Meleagris gallopavo ENSMGAG00000004431 D
IRF6 Microcebus murinus ENSMICG00000001233 I
IRF6 Myotis lucifugus ENSMLUG00000004509 I
IRF6 Macaca mulatta ENSMMUG00000022065 I
IRF6 Monodelphis domestica ENSMODG00000002539 I
IRF5 Monodelphis domestica ENSMODG00000014710 I
ENSMPUG00000003106 Mustela putorius furo ENSMPUG00000003106 I
Irf6 Mus musculus ENSMUSG00000026638 D
ENSNLEG00000001962 Nomascus leucogenys ENSNLEG00000001962 I
IRF6 Ornithorhynchus anatinus ENSOANG00000013718 I
ENSOARG00000012720 Ovis aries ENSOARG00000012720 I
ENSOARG00000020948 Ovis aries ENSOARG00000020948 I
IRF6 Oryctolagus cuniculus ENSOCUG00000004035 I
IRF6 Otolemur garnettii ENSOGAG00000010708 I
ENSONIG00000007600 Oreochromis niloticus ENSONIG00000007600 I
ENSONIG00000018961 Oreochromis niloticus ENSONIG00000018961 I
IRF6 Ochotona princeps ENSOPRG00000014295 I
irf6 Oryzias latipes ENSORLG00000000511 I
ENSP00000349770-D2 Bos grunniens ENSP00000349770-D2 I
ENSP00000355988 Macaca fascicularis ENSP00000355988 I
ENSPANG00000011328 Papio anubis ENSPANG00000011328 I
IRF6 Procavia capensis ENSPCAG00000006456 I
ENSPFOG00000005876 Poecilia formosa ENSPFOG00000005876 I
ENSPFOG00000013528 Poecilia formosa ENSPFOG00000013528 I
ENSPFOG00000014077 Poecilia formosa ENSPFOG00000014077 I
ENSPPYG00000000253 Pongo abelii ENSPPYG00000000253 I
ENSPSIG00000003597 Pelodiscus sinensis ENSPSIG00000003597 I
IRF6 Pan troglodytes ENSPTRG00000001941 I
IRF6 Pteropus vampyrus ENSPVAG00000004865 I
ENSSHAG00000006683 Sarcophilus harrisii ENSSHAG00000006683 I
IRF6 Sus scrofa ENSSSCG00000015612 I
ENSSTOG00000028204 Ictidomys tridecemlineatus ENSSTOG00000028204 I
IRF6 Taeniopygia guttata ENSTGUG00000001485 I
irf5 Tetraodon nigroviridis ENSTNIG00000003346 I
irf6 Tetraodon nigroviridis ENSTNIG00000014635 I
irf5 Takifugu rubripes ENSTRUG00000000641 I
irf6 Takifugu rubripes ENSTRUG00000006951 I
ENSTSYG00000010982 Tarsius syrichta ENSTSYG00000010982 I
IRF6 Tursiops truncatus ENSTTRG00000001121 I
IRF6 Vicugna pacos ENSVPAG00000010247 I
ENSXMAG00000007143 Xiphophorus maculatus ENSXMAG00000007143 I
ENSXMAG00000013056 Xiphophorus maculatus ENSXMAG00000013056 I
Myotis_brandtii_IRF6_10012270 Myotis brandtii Myotis_brandtii_IRF6_10012270 I
Ogr12956 Ophisaurus gracilis Ogr12956 I
Pvit_14327 Pogona vitticeps Pvit_14327 I
Pvit_15428 Pogona vitticeps Pvit_15428 I
irf6.2 Xenopus tropicalis XB-GENE-5910331 D
irf6.2.L Xenopus laevis XB-GENE-5910427 I
irf6 Xenopus tropicalis XB-GENE-876410 I
irf6.S Xenopus laevis XB-GENE-876421 I
irf5 Xenopus tropicalis XB-GENE-998624 I
irf5.L Xenopus laevis XB-GENE-998629 D