Thhalv10002956m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002956m.g T259102_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002956m MADS box 10 54

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g078450 Brassica oleracea Bo9g078450 I 0.711
Bra029469 Brassica rapa Bra029469 I 0.711
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.787
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.778
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.822
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.864
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.841
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.935
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 1.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.778
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.745
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.787
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.766
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.787
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.844
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.778
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.778
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.787
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.733
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.745
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.778
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.733
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.733
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.733
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.711