TASK_0000457101 (Taenia asiatica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 TASK_0000457101 T259660_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TASK_0000457101-mRNA-1 MADS box 61 108

Links

Other MADS box family TFs
Other Taenia asiatica TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FRS7 Arabidopsis thaliana AT3G06250 N 0.000
FRS12 Arabidopsis thaliana AT5G18960 N 0.000
Bo3g013440 Brassica oleracea Bo3g013440 N 0.000
Bostr.2570s0035 Boechera stricta Bostr.2570s0035 N 0.000
Bostr.26527s0315 Boechera stricta Bostr.26527s0315 N 0.000
Cagra.0263s0023 Capsella grandiflora Cagra.0263s0023 N 0.000
Cagra.3793s0006 Capsella grandiflora Cagra.3793s0006 N 0.000
Carubv10000255m.g Capsella rubella Carubv10000255m.g N 0.000
Carubv10013017m.g Capsella rubella Carubv10013017m.g N 0.000
cassava1998.valid.m1 Manihot esculenta cassava1998.valid.m1 N 0.000
Ciclev10004376m.g Citrus clementina Ciclev10004376m.g N 0.000
Cucsa.253860 Cucumis sativus Cucsa.253860 N 0.000
evm.TU.supercontig_16.55 Carica papaya evm.TU.supercontig_16.55 N 0.000
gene06133-v1.0-hybrid Fragaria vesca gene06133-v1.0-hybrid N 0.000
GLYMA13G28230 Glycine max GLYMA13G28230 N 0.000
GLYMA15G10830 Glycine max GLYMA15G10830 N 0.000
Gorai.006G255400 Gossypium raimondii Gorai.006G255400 N 0.000
MDP0000295749 Malus domestica MDP0000295749 N 0.000
mgf010461m Mimulus guttatus mgf010461m N 0.000
orange1.1g004138m.g Citrus sinensis orange1.1g004138m.g N 0.000
PK22885.1 Cannabis sativa PK22885.1 N 0.000
Pm008044 Prunus mume Pm008044 N 0.000
POPTR_0008s20380 Populus trichocarpa POPTR_0008s20380 N 0.000
POPTR_0010s03000 Populus trichocarpa POPTR_0010s03000 N 0.000
PRUPE_ppa001884mg Prunus persica PRUPE_ppa001884mg N 0.000
SapurV1A.0152s0560 Salix purpurea SapurV1A.0152s0560 N 0.000
SapurV1A.0407s0270 Salix purpurea SapurV1A.0407s0270 N 0.000
SapurV1A.1026s0020 Salix purpurea SapurV1A.1026s0020 N 0.000
Solyc10g084220.1 Solanum lycopersicum Solyc10g084220.1 N 0.000
TCM_021065 Theobroma cacao TCM_021065 N 0.000
Thhalv10012731m.g Eutrema salsugineum Thhalv10012731m.g N 0.000
Thhalv10020128m.g Eutrema salsugineum Thhalv10020128m.g N 0.000
VIT_05s0020g02450 Vitis vinifera VIT_05s0020g02450 N 0.000