BRADI3G51960 (Brachypodium distachyon)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 BRADI3G51960 T268310_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.854 0.848
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.854 0.848
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.854 0.848
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.854 0.848
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.854 0.848
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.836 0.848
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.836 0.848
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.827 0.826
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.800 0.804
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.781 0.783
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.781 0.783
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.758 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.758 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.758 0.804
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G51960.1 Myb 61 106

Links

Other Myb/SANT family TFs
Other Brachypodium distachyon TFs

287 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004464 Ricinus communis 30076.m004464 I 0.836
30171.m000418 Ricinus communis 30171.m000418 I 0.809
AMTR_s00001p00272270 Amborella trichopoda AMTR_s00001p00272270 I 0.836
AMTR_s00044p00072910 Amborella trichopoda AMTR_s00044p00072910 I 0.809
Aquca_002_01329 Aquilegia coerulea Aquca_002_01329 I 0.809
Aquca_013_00001 Aquilegia coerulea Aquca_013_00001 I 0.781
LHY Arabidopsis thaliana AT1G01060 D 0.836
CCA1 Arabidopsis thaliana AT2G46830 D 0.781
BGIOSGA002364 Oryza indica BGIOSGA002364 I 0.000
BGIOSGA028019 Oryza indica BGIOSGA028019 I 0.827
Bo2g013560 Brassica oleracea Bo2g013560 I 0.751
Bo3g001090 Brassica oleracea Bo3g001090 I 0.843
Bo4g006930 Brassica oleracea Bo4g006930 I 0.787
Bo5g002760 Brassica oleracea Bo5g002760 I 0.836
Bo5g025310 Brassica oleracea Bo5g025310 I 0.869
Bo9g161410 Brassica oleracea Bo9g161410 I 0.691
Bostr.25993s0083 Boechera stricta Bostr.25993s0083 I 0.763
Bostr.5325s0026 Boechera stricta Bostr.5325s0026 I 0.836
Bostr.7128s0434 Boechera stricta Bostr.7128s0434 I 0.844
Bra004503 Brassica rapa Bra004503 I 0.787
Bra006394 Brassica rapa Bra006394 I 0.740
Bra023610 Brassica rapa Bra023610 I 0.751
Bra025914 Brassica rapa Bra025914 I 0.869
Bra030496 Brassica rapa Bra030496 I 0.829
Bra033291 Brassica rapa Bra033291 I 0.836
BRADI1G29680 Brachypodium distachyon BRADI1G29680 I 0.876
BRADI1G34840 Brachypodium distachyon BRADI1G34840 I 0.000
BRADI2G34670 Brachypodium distachyon BRADI2G34670 I 0.665
BRADI3G16515 Brachypodium distachyon BRADI3G16515 I 0.845
Cagra.0050s0017 Capsella grandiflora Cagra.0050s0017 I 0.781
Cagra.0909s0012 Capsella grandiflora Cagra.0909s0012 I 0.844
Cagra.1968s0051 Capsella grandiflora Cagra.1968s0051 I 0.836
Cagra.4849s0004 Capsella grandiflora Cagra.4849s0004 I 0.769
Carubv10001147m.g Capsella rubella Carubv10001147m.g I 0.769
Carubv10008551m.g Capsella rubella Carubv10008551m.g I 0.836
Carubv10009624m.g Capsella rubella Carubv10009624m.g I 0.844
Carubv10022831m.g Capsella rubella Carubv10022831m.g I 0.781
cassava33517.m1 Manihot esculenta cassava33517.m1 I 0.809
cassava35529.valid.m1 Manihot esculenta cassava35529.valid.m1 I 0.809
cassava35530.valid.m1 Manihot esculenta cassava35530.valid.m1 I 0.809
cassava35531.valid.m1 Manihot esculenta cassava35531.valid.m1 I 0.809
cassava36126.valid.m1 Manihot esculenta cassava36126.valid.m1 I 0.836
Ca_14385 Cicer arietinum Ca_14385 I 0.775
CHLREDRAFT_112628 Chlamydomonas reinhardtii CHLREDRAFT_112628 I 0.746
CHLREDRAFT_123164 Chlamydomonas reinhardtii CHLREDRAFT_123164 I 0.775
chr3.CM0208.410.nd Lotus japonicus chr3.CM0208.410.nd I 0.834
Ciclev10011554m.g Citrus clementina Ciclev10011554m.g I 0.809
Ciclev10018964m.g Citrus clementina Ciclev10018964m.g I 0.834
Ciclev10020130m.g Citrus clementina Ciclev10020130m.g I 0.796
Cla009284 Citrullus lanatus Cla009284 I 0.770
Cla018914 Citrullus lanatus Cla018914 I 0.856
Cucsa.112530 Cucumis sativus Cucsa.112530 I 0.856
Cucsa.278220 Cucumis sativus Cucsa.278220 I 0.770
Cucsa.349800 Cucumis sativus Cucsa.349800 I 0.836
estExt_fgenesh2_pg.C_Chr_080053 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_080053 I 0.785
Eucgr.D02651 Eucalyptus grandis Eucgr.D02651 I 0.836
Eucgr.F02906 Eucalyptus grandis Eucgr.F02906 I 0.809
Eucgr.K02302 Eucalyptus grandis Eucgr.K02302 I 0.822
EuGene.0000110367 Micromonas pusilla EuGene.0000110367 I 0.804
evm.TU.supercontig_1055.1 Carica papaya evm.TU.supercontig_1055.1 I 0.836
evm.TU.supercontig_178.22 Carica papaya evm.TU.supercontig_178.22 I 0.769
evm.TU.supercontig_7.134 Carica papaya evm.TU.supercontig_7.134 I 0.822
e_gw1.04.00.501.1 Ostreococcus tauri e_gw1.04.00.501.1 N 0.000
e_gw1.96.88.1 Physcomitrella patens e_gw1.96.88.1 I 0.801
F775_18043 Aegilops tauschii F775_18043 I 0.909
F775_22242 Aegilops tauschii F775_22242 I 0.684
F775_22448 Aegilops tauschii F775_22448 I 0.000
F775_26024 Aegilops tauschii F775_26024 I 0.845
LHY Arabidopsis lyrata fgenesh2_kg.1__131__AT1G01060.3 I 0.763
fgeneshCV_pg.C_scaffold_1000277 Chlorella vulgaris fgeneshCV_pg.C_scaffold_1000277 I 0.775
Genemark1.422_g Coccomyxa subellipsoidea C169 Genemark1.422_g I 0.775
GLYMA02G40800 Glycine max GLYMA02G40800 I 0.775
GLYMA03G42260 Glycine max GLYMA03G42260 I 0.836
GLYMA07G05410 Glycine max GLYMA07G05410 I 0.836
GLYMA11G33180 Glycine max GLYMA11G33180 I 0.775
GLYMA14G39130 Glycine max GLYMA14G39130 I 0.775
GLYMA16G01980 Glycine max GLYMA16G01980 I 0.836
GLYMA18G05050 Glycine max GLYMA18G05050 I 0.775
GLYMA19G45030 Glycine max GLYMA19G45030 I 0.836
Gorai.001G069700 Gossypium raimondii Gorai.001G069700 I 0.854
Gorai.007G113900 Gossypium raimondii Gorai.007G113900 I 0.836
Gorai.008G131800 Gossypium raimondii Gorai.008G131800 I 0.818
Gorai.008G132000 Gossypium raimondii Gorai.008G132000 I 0.836
GRMZM2G014902 Zea mays GRMZM2G014902 I 0.845
GRMZM2G029850 Zea mays GRMZM2G029850 I 0.831
GRMZM2G170322 Zea mays GRMZM2G170322 I 0.860
GRMZM2G175265 Zea mays GRMZM2G175265 I 0.845
GSMUA_Achr10G06560_001 Musa acuminata GSMUA_Achr10G06560_001 I 0.836
GSMUA_Achr1G06360_001 Musa acuminata GSMUA_Achr1G06360_001 I 0.859
GSMUA_Achr8G13440_001 Musa acuminata GSMUA_Achr8G13440_001 I 0.741
GSMUA_AchrUn_randomG02340_001 Musa acuminata GSMUA_AchrUn_randomG02340_001 I 0.850
GSMUA_AchrUn_randomG03000_001 Musa acuminata GSMUA_AchrUn_randomG03000_001 I 0.852
gw1.325.30.1 Physcomitrella patens gw1.325.30.1 I 0.850
gw1.8.161.1 Volvox carteri gw1.8.161.1 I 0.812
gw1.9.308.1 Chlorella NC64A gw1.9.308.1 I 0.737
HpaG809245 Hyaloperonospora arabidopsidis HpaG809245 N 0.000
LjSGA_026437.1 Lotus japonicus LjSGA_026437.1 I 0.767
LPERR01G03340 Leersia perrieri LPERR01G03340 I 0.000
LPERR02G22990 Leersia perrieri LPERR02G22990 I 0.857
LPERR05G03900 Leersia perrieri LPERR05G03900 I 0.000
LPERR08G03480 Leersia perrieri LPERR08G03480 I 0.845
Lus10005134.g Linum usitatissimum Lus10005134.g I 0.802
Lus10010100.g Linum usitatissimum Lus10010100.g I 0.802
Lus10030184.g Linum usitatissimum Lus10030184.g I 0.802
MDP0000187927 Malus domestica MDP0000187927 I 0.798
MDP0000193097 Malus domestica MDP0000193097 I 0.801
MDP0000581293 Malus domestica MDP0000581293 I 0.798
mgf011909m Mimulus guttatus mgf011909m I 0.809
mgf014004m Mimulus guttatus mgf014004m I 0.834
mgf021826m Mimulus guttatus mgf021826m I 0.825
MLOC_14118 Hordeum vulgare MLOC_14118 I 0.845
MLOC_5590 Hordeum vulgare MLOC_5590 I 0.000
MTR_7g118330 Medicago truncatula MTR_7g118330 I 0.836
OB02G35470 Oryza brachyantha OB02G35470 I 0.857
OB05G14050 Oryza brachyantha OB05G14050 I 0.664
OB06G35920 Oryza brachyantha OB06G35920 I 0.876
OB08G13700 Oryza brachyantha OB08G13700 I 0.845
OBART01G03720 Oryza barthii OBART01G03720 I 0.000
OBART05G04360 Oryza barthii OBART05G04360 I 0.664
OBART05G04370 Oryza barthii OBART05G04370 I 0.664
OGLUM01G03980 Oryza glumaepatula OGLUM01G03980 I 0.000
OGLUM05G04280 Oryza glumaepatula OGLUM05G04280 I 0.664
OGLUM08G03510 Oryza glumaepatula OGLUM08G03510 I 0.827
OLONG_000103 Oryza longistaminata OLONG_000103 I 0.827
OMERI01G03530 Oryza meridionalis OMERI01G03530 I 0.000
OMERI05G04320 Oryza meridionalis OMERI05G04320 I 0.664
OMERI08G03470 Oryza meridionalis OMERI08G03470 I 0.827
ONIVA01G04110 Oryza nivara ONIVA01G04110 I 0.000
ONIVA05G04710 Oryza nivara ONIVA05G04710 I 0.664
ONIVA08G03410 Oryza nivara ONIVA08G03410 I 0.827
OPUNC01G03310 Oryza punctata OPUNC01G03310 I 0.000
OPUNC02G25920 Oryza punctata OPUNC02G25920 I 0.857
OPUNC08G03280 Oryza punctata OPUNC08G03280 I 0.845
orange1.1g004262m.g Citrus sinensis orange1.1g004262m.g I 0.834
orange1.1g012625m.g Citrus sinensis orange1.1g012625m.g I 0.809
orange1.1g021851m.g Citrus sinensis orange1.1g021851m.g I 0.796
ORGLA01G0032300 Oryza glaberrima ORGLA01G0032300 I 0.000
ORGLA08G0028700 Oryza glaberrima ORGLA08G0028700 I 0.827
ORUFI01G03800 Oryza rufipogon ORUFI01G03800 I 0.000
ORUFI05G04560 Oryza rufipogon ORUFI05G04560 I 0.664
OS01G0156000 Oryza sativa OS01G0156000 I 0.000
OS05G0162800 Oryza sativa OS05G0162800 I 0.664
OS08G0157600 Oryza sativa OS08G0157600 D 0.827
OSTLU_6612 Ostreococcus lucimarinus OSTLU_6612 I 0.692
Pavir.Ab02717 Panicum virgatum Pavir.Ab02717 I 0.891
Pavir.Fa01905 Panicum virgatum Pavir.Fa01905 I 0.845
Pavir.J28275 Panicum virgatum Pavir.J28275 N 0.000
Pavir.J34894 Panicum virgatum Pavir.J34894 I 0.845
Pavir.J37379 Panicum virgatum Pavir.J37379 N 0.000
PDK_20s1414244g001 Phoenix dactylifera PDK_20s1414244g001 I 0.827
PGSC0003DMG400011294 Solanum tuberosum PGSC0003DMG400011294 I 0.836
PGSC0003DMG400021459 Solanum tuberosum PGSC0003DMG400021459 I 0.809
PK20866.1 Cannabis sativa PK20866.1 I 0.836
Pm028731 Prunus mume Pm028731 I 0.836
Pm028732 Prunus mume Pm028732 I 0.753
POPTR_0002s18170 Populus trichocarpa POPTR_0002s18170 I 0.836
POPTR_0004s07270 Populus trichocarpa POPTR_0004s07270 I 0.809
POPTR_0012s03530 Populus trichocarpa POPTR_0012s03530 I 0.825
POPTR_0014s10240 Populus trichocarpa POPTR_0014s10240 I 0.790
POPTR_0015s05430 Populus trichocarpa POPTR_0015s05430 I 0.859
POPTR_0017s01380 Populus trichocarpa POPTR_0017s01380 I 0.809
PRUPE_ppa001765mg Prunus persica PRUPE_ppa001765mg I 0.836
PRUPE_ppa004107mg Prunus persica PRUPE_ppa004107mg I 0.753
PRUPE_ppa005083mg Prunus persica PRUPE_ppa005083mg I 0.809
SapurV1A.0003s0380 Salix purpurea SapurV1A.0003s0380 I 0.836
SapurV1A.0074s0170 Salix purpurea SapurV1A.0074s0170 I 0.859
SapurV1A.0147s0490 Salix purpurea SapurV1A.0147s0490 I 0.803
SapurV1A.0162s0390 Salix purpurea SapurV1A.0162s0390 I 0.836
SapurV1A.0202s0430 Salix purpurea SapurV1A.0202s0430 I 0.825
SapurV1A.0985s0170 Salix purpurea SapurV1A.0985s0170 I 0.803
Sb03g005480 Sorghum bicolor Sb03g005480 I 0.000
Sb04g031590 Sorghum bicolor Sb04g031590 I 0.891
Sb07g003870 Sorghum bicolor Sb07g003870 I 0.845
CCA1 Arabidopsis lyrata scaffold_403655.1 I 0.781
SELMODRAFT_19475 Selaginella moellendorffii SELMODRAFT_19475 I 0.801
SELMODRAFT_29451 Selaginella moellendorffii SELMODRAFT_29451 I 0.801
Si002704m.g Setaria italica Si002704m.g I 0.671
Si014685m.g Setaria italica Si014685m.g I 0.845
Si017289m.g Setaria italica Si017289m.g I 0.909
Solyc02g036370.2 Solanum lycopersicum Solyc02g036370.2 I 0.809
Solyc10g005080.2 Solanum lycopersicum Solyc10g005080.2 I 0.836
TCM_005021 Theobroma cacao TCM_005021 I 0.836
Thhalv10007028m.g Eutrema salsugineum Thhalv10007028m.g I 0.836
Thhalv10008035m.g Eutrema salsugineum Thhalv10008035m.g I 0.859
Thhalv10013821m.g Eutrema salsugineum Thhalv10013821m.g I 0.751
Traes_1BS_24DBD38A8 Triticum aestivum Traes_1BS_24DBD38A8 I 0.000
Traes_6BL_2F2381640 Triticum aestivum Traes_6BL_2F2381640 I 0.909
Traes_7AL_19F222799 Triticum aestivum Traes_7AL_19F222799 I 0.845
Traes_7BL_998EC9F74 Triticum aestivum Traes_7BL_998EC9F74 I 0.845
Traes_7DL_310E46F15 Triticum aestivum Traes_7DL_310E46F15 I 0.845
TRIUR3_06252 Triticum urartu TRIUR3_06252 I 0.684
TRIUR3_13396 Triticum urartu TRIUR3_13396 I 0.845
TRIUR3_24634 Triticum urartu TRIUR3_24634 I 0.000
RVE1 Vitis vinifera VIT_04s0079g00410 I 0.809
VIT_15s0048g02410 Vitis vinifera VIT_15s0048g02410 I 0.836