fgenesh2_kg.277__1__AT5G58850.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.277__1__AT5G58850.1 T270757_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.672 0.753
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.672 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.277__1__AT5G58850.1 Myb 105 151
fgenesh2_kg.277__1__AT5G58850.1 Myb 157 202

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29681.m001315 Ricinus communis 29681.m001315 N 0.695
MYB64 Arabidopsis thaliana AT5G11050 N 0.819
Bo2g028290 Brassica oleracea Bo2g028290 I 0.875
Bo3g018490 Brassica oleracea Bo3g018490 I 0.862
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.875
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.718
Bra006744 Brassica rapa Bra006744 I 0.862
Bra020346 Brassica rapa Bra020346 I 0.879
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.900
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.795
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.795
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.900
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.724
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.695
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.720
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.727
Cla008304 Citrullus lanatus Cla008304 N 0.735
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.732
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.724
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.909
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.819
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.695
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.740
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.676
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.674
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.674
LjSGA_147332.1 Lotus japonicus LjSGA_147332.1 N 0.730
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.697
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.693
MDP0000319656 Malus domestica MDP0000319656 I 0.683
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.693
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.758
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.727
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.721
Pm000541 Prunus mume Pm000541 I 0.686
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.691
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.681
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.686
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.661
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.721
TCM_041651 Theobroma cacao TCM_041651 N 0.701
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.854
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.828
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.854