OBART06G24250 (Oryza barthii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OBART06G24250 T275548_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.891 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.883 0.935
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.883 0.935
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.883 0.935
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.883 0.935
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.883 0.935
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.881 0.957
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.881 0.957
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.881 0.957
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.800 0.848
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.785 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.785 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.785 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART06G24250.1 Myb 78 123

Links

Other Myb/SANT family TFs
Other Oryza barthii TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011644 Calypte anna Aan_R011644 I 0.000
Afo_R004692 Aptenodytes forsteri Afo_R004692 I 0.000
Alligator_sinensis_CCG020881.1 Alligator sinensis Alligator_sinensis_CCG020881.1 I 0.000
Brh_R011012 Buceros rhinoceros Brh_R011012 I 0.000
Cmyd_10012301 Chelonia mydas Cmyd_10012301 I 0.000
ZBTB42 Anolis carolinensis ENSACAG00000011451 I 0.000
ENSAMEG00000007755 Ailuropoda melanoleuca ENSAMEG00000007755 I 0.000
ENSCSAG00000019588 Chlorocebus sabaeus ENSCSAG00000019588 I 0.000
zbtb42 Danio rerio ENSDARG00000102761 I 0.000
ENSFALG00000014898 Ficedula albicollis ENSFALG00000014898 I 0.000
ZBTB42 Homo sapiens ENSG00000179627 D 0.000
zbtb42 Gasterosteus aculeatus ENSGACG00000006297 I 0.000
ZBTB42 Gallus gallus ENSGALG00000023025 I 0.000
ENSLOCG00000012759 Lepisosteus oculatus ENSLOCG00000012759 I 0.000
ZBTB42 Meleagris gallopavo ENSMGAG00000015389 I 0.000
ZBTB42 Monodelphis domestica ENSMODG00000013701 I 0.000
ENSONIG00000012149 Oreochromis niloticus ENSONIG00000012149 I 0.000
zbtb42 Oryzias latipes ENSORLG00000017008 I 0.000
ENSP00000409107 Macaca fascicularis ENSP00000409107 I 0.000
ENSPFOG00000010298 Poecilia formosa ENSPFOG00000010298 I 0.000
ENSPSIG00000000487 Pelodiscus sinensis ENSPSIG00000000487 I 0.000
ZBTB42 Pan troglodytes ENSPTRG00000040287 I 0.000
zbtb42 Tetraodon nigroviridis ENSTNIG00000000917 I 0.000
zbtb42 Takifugu rubripes ENSTRUG00000013592 I 0.000
ENSXMAG00000006703 Xiphophorus maculatus ENSXMAG00000006703 I 0.000
Gfo_R006792 Geospiza fortis Gfo_R006792 I 0.000
Ogr11588 Ophisaurus gracilis Ogr11588 I 0.000
Pvit_02527 Pogona vitticeps Pvit_02527 I 0.000
znf238.2 Xenopus tropicalis XB-GENE-1219066 I 0.000
znf238.2.L Xenopus laevis XB-GENE-1219070 I 0.000