znf238.2 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-1219066 T145393_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB42
M08351_2.00 		Homo sapiens
MRCAKCTGS
SCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
B2RXF5_2-4.RCADE 		0.782 0.890
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002940762 C2H2 ZF 377 399
XP_002940762 C2H2 ZF 418 439
XP_002940762 C2H2 ZF 445 467
XP_002940762 C2H2 ZF 473 496

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZBTB42 Monodelphis domestica ENSMODG00000013701 I 0.821
ENSSHAG00000008534 Sarcophilus harrisii ENSSHAG00000008534 I 0.821
ZBTB42 Gallus gallus ENSGALG00000023025 I 0.812
ZBTB42 Meleagris gallopavo ENSMGAG00000015389 I 0.812
Alligator_sinensis_CCG020881.1 Alligator sinensis Alligator_sinensis_CCG020881.1 I 0.812
ENSONIG00000012149 Oreochromis niloticus ENSONIG00000012149 I 0.810
zbtb42 Oryzias latipes ENSORLG00000017008 I 0.810
ENSPFOG00000010298 Poecilia formosa ENSPFOG00000010298 I 0.810
zbtb42 Tetraodon nigroviridis ENSTNIG00000000917 I 0.810
zbtb42 Takifugu rubripes ENSTRUG00000013592 I 0.810
ENSXMAG00000006703 Xiphophorus maculatus ENSXMAG00000006703 I 0.810
Ogr11588 Ophisaurus gracilis Ogr11588 I 0.809
ENSLOCG00000012759 Lepisosteus oculatus ENSLOCG00000012759 I 0.807
zbtb42 Danio rerio ENSDARG00000102761 I 0.806
zbtb42 Gasterosteus aculeatus ENSGACG00000006297 I 0.805
ZBTB42 Anolis carolinensis ENSACAG00000011451 I 0.799
Pvit_02527 Pogona vitticeps Pvit_02527 I 0.785
ENSCSAG00000019588 Chlorocebus sabaeus ENSCSAG00000019588 I 0.782
ZBTB42 Homo sapiens ENSG00000179627 D 0.782
ZBTB42 Pan troglodytes ENSPTRG00000040287 I 0.782
ENSP00000409107 Macaca fascicularis ENSP00000409107 I 0.782
znf238.2.L Xenopus laevis XB-GENE-1219070 I 0.772
ENSAMEG00000007755 Ailuropoda melanoleuca ENSAMEG00000007755 I 0.769
ENSFALG00000014898 Ficedula albicollis ENSFALG00000014898 I 0.757
Aan_R011644 Calypte anna Aan_R011644 I 0.757
Afo_R004692 Aptenodytes forsteri Afo_R004692 I 0.757
Brh_R011012 Buceros rhinoceros Brh_R011012 I 0.757
Gfo_R006792 Geospiza fortis Gfo_R006792 I 0.757