PGSC0003DMG400018588 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400018588 T277636_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.796 0.888
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.701 0.806
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.674 0.769
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.674 0.769
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.664 0.784
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400047825 Myb 46 92
PGSC0003DMT400047825 Myb 124 165
PGSC0003DMT400047825 Myb 171 215

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003447 Ricinus communis 29794.m003447 I 0.662
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.674
Bo1g010040 Brassica oleracea Bo1g010040 I 0.670
Bo3g171130 Brassica oleracea Bo3g171130 I 0.663
Bo7g115810 Brassica oleracea Bo7g115810 I 0.663
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.674
Bra011376 Brassica rapa Bra011376 I 0.670
Bra034531 Brassica rapa Bra034531 I 0.663
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.677
Ca_01884 Cicer arietinum Ca_01884 I 0.688
Ca_14925 Cicer arietinum Ca_14925 I 0.687
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.687
Cla022565 Citrullus lanatus Cla022565 I 0.673
Cla023357 Citrullus lanatus Cla023357 I 0.675
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.673
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.675
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.673
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.692
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.674
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.690
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.674
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.674
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.683
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.668
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.673
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.679
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.671
MDP0000179225 Malus domestica MDP0000179225 I 0.698
MDP0000295807 Malus domestica MDP0000295807 I 0.679
mgf008601m Mimulus guttatus mgf008601m I 0.677
mgf019610m Mimulus guttatus mgf019610m I 0.671
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.682
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.682
OB12G16480 Oryza brachyantha OB12G16480 I 0.671
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.671
OS12G0238000 Oryza sativa OS12G0238000 I 0.671
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.665
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.665
PK12011.1 Cannabis sativa PK12011.1 D 0.664
Pm002704 Prunus mume Pm002704 I 0.668
Pm005124 Prunus mume Pm005124 I 0.679
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.675
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.669
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.692
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.668
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.701
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.796
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.673
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.674
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.879
TCM_021936 Theobroma cacao TCM_021936 I 0.668
TCM_047091 Theobroma cacao TCM_047091 I 0.675
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.686
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.662