POPTR_0018s07040 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0018s07040 T278523_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.749 0.787
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.731 0.787
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.731 0.787
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.720 0.702
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.720 0.702
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.720 0.702
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.720 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s07040.1 Myb 5 57

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015364 Calypte anna Aan_R015364 I 0.000
Afo_R001760 Aptenodytes forsteri Afo_R001760 I 0.000
Alligator_sinensis_CCG020380.1 Alligator sinensis Alligator_sinensis_CCG020380.1 I 0.000
Brh_R011720 Buceros rhinoceros Brh_R011720 I 0.000
Cmyd_10010636 Chelonia mydas Cmyd_10010636 I 0.000
ENSACAG00000001604 Anolis carolinensis ENSACAG00000001604 I 0.000
ENSAMEG00000019874 Ailuropoda melanoleuca ENSAMEG00000019874 I 0.000
MSGN1 Bos taurus ENSBTAG00000039113 I 0.000
MSGN1 Canis familiaris ENSCAFG00000003750 I 0.000
MSGN1 Callithrix jacchus ENSCJAG00000032633 I 0.000
MSGN1 Cavia porcellus ENSCPOG00000003061 I 0.000
ENSCSAG00000000377 Chlorocebus sabaeus ENSCSAG00000000377 I 0.000
MSGN1 Dasypus novemcinctus ENSDNOG00000013441 I 0.000
Msgn1 Dipodomys ordii ENSDORG00000003509 I 0.000
MSGN1 Equus caballus ENSECAG00000002724 I 0.000
MSGN1 Erinaceus europaeus ENSEEUG00000015222 I 0.000
ENSFALG00000001820 Ficedula albicollis ENSFALG00000001820 I 0.000
MSGN1 Felis catus ENSFCAG00000013583 I 0.000
MSGN1 Homo sapiens ENSG00000151379 D 0.000
MSGN1 Gallus gallus ENSGALG00000016469 I 0.000
MSGN1 Gorilla gorilla ENSGGOG00000012168 I 0.000
MSGN1 Loxodonta africana ENSLAFG00000015319 I 0.000
ENSLOCG00000017878 Lepisosteus oculatus ENSLOCG00000017878 I 0.000
ENSMEUG00000006206 Macropus eugenii ENSMEUG00000006206 I 0.000
MSGN1 Meleagris gallopavo ENSMGAG00000016374 I 0.000
ENSMICG00000010842 Microcebus murinus ENSMICG00000010842 I 0.000
MSGN1 Myotis lucifugus ENSMLUG00000007599 I 0.000
MSGN1 Macaca mulatta ENSMMUG00000008141 I 0.000
MSGN1 Monodelphis domestica ENSMODG00000004056 I 0.000
ENSMPUG00000019484 Mustela putorius furo ENSMPUG00000019484 I 0.000
Msgn1 Mus musculus ENSMUSG00000047002 D 0.000
ENSNLEG00000018810 Nomascus leucogenys ENSNLEG00000018810 I 0.000
MSGN1 Ornithorhynchus anatinus ENSOANG00000002188 I 0.000
ENSOARG00000016765 Ovis aries ENSOARG00000016765 I 0.000
MSGN1 Oryctolagus cuniculus ENSOCUG00000000309 I 0.000
MSGN1 Otolemur garnettii ENSOGAG00000012569 I 0.000
ENSP00000281047 Macaca fascicularis ENSP00000281047 I 0.000
ENSP00000281047-D1 Bos grunniens ENSP00000281047-D1 I 0.000
ENSPANG00000004064 Papio anubis ENSPANG00000004064 I 0.000
MSGN1 Procavia capensis ENSPCAG00000015116 I 0.000
ENSPPYG00000012628 Pongo abelii ENSPPYG00000012628 I 0.000
MSGN1 Pan troglodytes ENSPTRG00000011679 I 0.000
MSGN1 Pteropus vampyrus ENSPVAG00000015666 I 0.000
Msgn1 Rattus norvegicus ENSRNOG00000028518 I 0.000
MSGN1 Sorex araneus ENSSARG00000007866 I 0.000
MSGN1 Sus scrofa ENSSSCG00000026538 I 0.000
ENSSTOG00000013981 Ictidomys tridecemlineatus ENSSTOG00000013981 I 0.000
MSGN1 Tupaia belangeri ENSTBEG00000001387 I 0.000
MSGN1 Taeniopygia guttata ENSTGUG00000013122 I 0.000
ENSTSYG00000003733 Tarsius syrichta ENSTSYG00000003733 I 0.000
MSGN1 Tursiops truncatus ENSTTRG00000015917 I 0.000
Gfo_R015241 Geospiza fortis Gfo_R015241 I 0.000
Myotis_brandtii_MSGN1_10020188 Myotis brandtii Myotis_brandtii_MSGN1_10020188 I 0.000
Ogr03919 Ophisaurus gracilis Ogr03919 I 0.000
Pvit_07087 Pogona vitticeps Pvit_07087 I 0.000
Tal_R008386 Tyto alba Tal_R008386 I 0.000