Cagra.0917s0007 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0917s0007 T285999_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAX3
M02700_2.00 		Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS		 SELEX
Mathelier et al.(2014)
MA0576.1 		0.903 0.946
RAX3
M11043_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB84_01 		0.903 0.946
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0917s0007.1.p Myb 14 62
Cagra.0917s0007.1.p Myb 68 113

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

478 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AACERI_AaceriAAR026W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAR026W I
Aan_R000440 Calypte anna Aan_R000440 I
Afo_R001715 Aptenodytes forsteri Afo_R001715 I
AGOS_AAR026W Ashbya gossypii AGOS_AAR026W I
Alligator_sinensis_CCG000124.1 Alligator sinensis Alligator_sinensis_CCG000124.1 I
Brh_R002687 Buceros rhinoceros Brh_R002687 I
CANTEDRAFT_136140 Candida tenuis CANTEDRAFT_136140 I
CGI_10003963 Crassostrea gigas CGI_10003963 I
Cmyd_10005373 Chelonia mydas Cmyd_10005373 I
csin104163 Clonorchis sinensis csin104163 I
D915_09544 Fasciola hepatica D915_09544 I
DAPPUDRAFT_313324 Daphnia pulex DAPPUDRAFT_313324 I
DICSQDRAFT_40774 Dichomitus squalens DICSQDRAFT_40774 I
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I
Ecym_1257 Eremothecium cymbalariae Ecym_1257 I
HBP1 Anolis carolinensis ENSACAG00000015023 I
ENSAMEG00000013492 Ailuropoda melanoleuca ENSAMEG00000013492 I
ENSAMXG00000017678 Astyanax mexicanus ENSAMXG00000017678 I
ENSAPLG00000007110 Anas platyrhynchos ENSAPLG00000007110 I
HBP1 Bos taurus ENSBTAG00000005524 I
ENSBTAP00000044156-D1 Bos grunniens ENSBTAP00000044156-D1 I
HBP1 Canis familiaris ENSCAFG00000003939 I
HBP1 Callithrix jacchus ENSCJAG00000016260 I
HBP1 Cavia porcellus ENSCPOG00000002375 I
ENSCSAG00000011395 Chlorocebus sabaeus ENSCSAG00000011395 I
hbp1 Danio rerio ENSDARG00000028517 I
HBP1 Dasypus novemcinctus ENSDNOG00000004405 I
Hbp1 Dipodomys ordii ENSDORG00000010576 I
HBP1 Equus caballus ENSECAG00000020969 I
HBP1 Echinops telfairi ENSETEG00000018542 I
ENSFALG00000010259 Ficedula albicollis ENSFALG00000010259 I
HBP1 Homo sapiens ENSG00000105856 D
hbp1 Gasterosteus aculeatus ENSGACG00000010054 I
ENSGACG00000019192 Gasterosteus aculeatus ENSGACG00000019192 I
HBP1 Gallus gallus ENSGALG00000008050 I
HBP1 Gorilla gorilla ENSGGOG00000007788 I
ENSGMOG00000013782 Gadus morhua ENSGMOG00000013782 I
ENSLACG00000009119 Latimeria chalumnae ENSLACG00000009119 I
HBP1 Loxodonta africana ENSLAFG00000005317 I
ENSLOCG00000015822 Lepisosteus oculatus ENSLOCG00000015822 I
ENSMEUG00000011116 Macropus eugenii ENSMEUG00000011116 I
HBP1 Meleagris gallopavo ENSMGAG00000006880 I
HBP1 Microcebus murinus ENSMICG00000012858 I
HBP1 Myotis lucifugus ENSMLUG00000012425 I
HBP1 Macaca mulatta ENSMMUG00000015409 I
HBP1 Monodelphis domestica ENSMODG00000016376 I
ENSMPUG00000018249 Mustela putorius furo ENSMPUG00000018249 I
Hbp1 Mus musculus ENSMUSG00000002996 D
ENSNLEG00000008761 Nomascus leucogenys ENSNLEG00000008761 I
HBP1 Ornithorhynchus anatinus ENSOANG00000003174 I
ENSOARG00000005055 Ovis aries ENSOARG00000005055 I
HBP1 Oryctolagus cuniculus ENSOCUG00000012758 I
HBP1 Otolemur garnettii ENSOGAG00000013102 I
ENSONIG00000008523 Oreochromis niloticus ENSONIG00000008523 I
ENSONIG00000011868 Oreochromis niloticus ENSONIG00000011868 I
hbp1 Oryzias latipes ENSORLG00000004396 I
ENSORLG00000009474 Oryzias latipes ENSORLG00000009474 I
ENSP00000420500 Macaca fascicularis ENSP00000420500 I
ENSPANG00000024385 Papio anubis ENSPANG00000024385 I
HBP1 Procavia capensis ENSPCAG00000014060 I
ENSPFOG00000003951 Poecilia formosa ENSPFOG00000003951 I
ENSPFOG00000012271 Poecilia formosa ENSPFOG00000012271 I
ENSPMAG00000002631 Petromyzon marinus ENSPMAG00000002631 I
ENSPPYG00000017898 Pongo abelii ENSPPYG00000017898 I
ENSPSIG00000012478 Pelodiscus sinensis ENSPSIG00000012478 I
HBP1 Pan troglodytes ENSPTRG00000019575 I
HBP1 Pteropus vampyrus ENSPVAG00000014543 I
Hbp1 Rattus norvegicus ENSRNOG00000008927 I
HBP1 Sorex araneus ENSSARG00000007731 I
ENSSHAG00000010948 Sarcophilus harrisii ENSSHAG00000010948 I
ENSSTOG00000013846 Ictidomys tridecemlineatus ENSSTOG00000013846 I
HBP1 Tupaia belangeri ENSTBEG00000007793 I
HBP1 Taeniopygia guttata ENSTGUG00000003100 I
ENSTNIG00000002023 Tetraodon nigroviridis ENSTNIG00000002023 I
hbp1 Tetraodon nigroviridis ENSTNIG00000016027 I
ENSTRUG00000011881 Takifugu rubripes ENSTRUG00000011881 I
hbp1 Takifugu rubripes ENSTRUG00000016990 I
ENSTSYG00000010057 Tarsius syrichta ENSTSYG00000010057 I
HBP1 Tursiops truncatus ENSTTRG00000006826 I
HBP1 Vicugna pacos ENSVPAG00000008629 I
ENSXMAG00000007586 Xiphophorus maculatus ENSXMAG00000007586 I
ENSXMAG00000016455 Xiphophorus maculatus ENSXMAG00000016455 I
e_gw.61.169.1 Branchiostoma floridae e_gw.61.169.1 I
e_gw.633.29.1 Branchiostoma floridae e_gw.633.29.1 I
GI22721 Drosophila mojavensis FBgn0145448 I
GL12097 Drosophila persimilis FBgn0149705 I
GA30228 Drosophila pseudoobscura FBgn0263363 I
GB51010 Apis mellifera GB51010 I
Gfo_R011321 Geospiza fortis Gfo_R011321 I
HelroG148167 Helobdella robusta HelroG148167 I
ISCW021979 Ixodes scapularis ISCW021979 I
L798_09303 Zootermopsis nevadensis L798_09303 I
ML040423a Mnemiopsis leidyi ML040423a I
Myotis_brandtii_HBP1_10033916 Myotis brandtii Myotis_brandtii_HBP1_10033916 I
NEMVEDRAFT_v1g120503 Nematostella vectensis NEMVEDRAFT_v1g120503 I
PHUM534240 Pediculus humanus PHUM534240 I
Pvit_03004 Pogona vitticeps Pvit_03004 I
SMAR013235 Strigamia maritima SMAR013235 I
Smp_148110 Schistosoma mansoni Smp_148110 I
SNAPOd2T00000335001 Oikopleura dioica SNAPOd2T00000335001 I
T265_01499 Opisthorchis viverrini T265_01499 I
Tal_R010197 Tyto alba Tal_R010197 I
tetur23g00840 Tetranychus urticae tetur23g00840 I
TriadG55419 Trichoplax adhaerens TriadG55419 I
hbp1.S Xenopus laevis XB-GENE-17342930 I
hbp1 Xenopus tropicalis XB-GENE-950343 I
hbp1.L Xenopus laevis XB-GENE-950348 I
XP_002155149.1 Hydra magnipapillata XP_002155149.1 I
ZBAI_00389 Zygosaccharomyces bailii ZBAI_00389 I
ZBAI_05541 Zygosaccharomyces bailii ZBAI_05541 I
ZYRO0C16214g Zygosaccharomyces rouxii ZYRO0C16214g I