orange1.1g023196m.g (Citrus sinensis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 orange1.1g023196m.g T288844_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.776 0.830
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.776 0.830
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.776 0.830
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.692 0.787
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.692 0.787
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.671 0.798
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.663 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g023196m Myb 124 171

Links

Other Myb/SANT family TFs
Other Citrus sinensis TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28288.m000014 Ricinus communis 28288.m000014 I 0.680
29610.m000410 Ricinus communis 29610.m000410 I 0.792
29681.m001296 Ricinus communis 29681.m001296 I 0.673
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.670
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.668
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.776
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.671
Bo1g141120 Brassica oleracea Bo1g141120 I 0.744
Bo5g136680 Brassica oleracea Bo5g136680 I 0.750
Bo9g135730 Brassica oleracea Bo9g135730 I 0.684
Bo9g176900 Brassica oleracea Bo9g176900 I 0.675
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.671
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.765
Bra002610 Brassica rapa Bra002610 I 0.664
Bra009134 Brassica rapa Bra009134 I 0.675
Bra034173 Brassica rapa Bra034173 I 0.761
Bra034853 Brassica rapa Bra034853 I 0.739
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.786
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.661
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.661
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.786
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.797
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.679
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.803
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.664
Ca_12513 Cicer arietinum Ca_12513 I 0.738
Ca_19327 Cicer arietinum Ca_19327 I 0.667
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.682
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.701
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.892
Cla004397 Citrullus lanatus Cla004397 I 0.773
Cla013553 Citrullus lanatus Cla013553 I 0.710
Cla018399 Citrullus lanatus Cla018399 I 0.699
Cucsa.067080 Cucumis sativus Cucsa.067080 I 0.699
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.700
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.751
Eucgr.G03029 Eucalyptus grandis Eucgr.G03029 I 0.713
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.662
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.689
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.776
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.750
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.797
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.677
gene20912-v1.0-hybrid Fragaria vesca gene20912-v1.0-hybrid I 0.744
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.680
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.729
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.664
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.716
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.729
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.680
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.716
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.664
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.664
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.689
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.680
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.823
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.667
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.763
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.736
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.729
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.665
MDP0000142580 Malus domestica MDP0000142580 I 0.676
MDP0000221993 Malus domestica MDP0000221993 I 0.676
MDP0000277813 Malus domestica MDP0000277813 I 0.735
MDP0000809640 Malus domestica MDP0000809640 I 0.699
mgf010347m Mimulus guttatus mgf010347m I 0.726
mgf022442m Mimulus guttatus mgf022442m I 0.723
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.662
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.704
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.667
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.682
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.701
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I 0.698
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.809
PK15104.1 Cannabis sativa PK15104.1 I 0.774
PK27213.1 Cannabis sativa PK27213.1 D 0.692
PK27693.1 Cannabis sativa PK27693.1 D 0.663
Pm002536 Prunus mume Pm002536 I 0.667
Pm018878 Prunus mume Pm018878 I 0.764
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.735
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.797
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.720
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.793
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.669
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.667
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.764
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.681
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.681
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.793
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.761
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.669
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.669
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.671
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.732
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.809
TCM_021750 Theobroma cacao TCM_021750 I 0.664
TCM_041672 Theobroma cacao TCM_041672 I 0.671
TCM_042604 Theobroma cacao TCM_042604 I 0.749
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.664
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.750
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.664
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.663
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.793