CBN08474 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN08474 T301718_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN

NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.898 0.643
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN

NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.831 0.529
Hnf4
M03935_2.00
Drosophila melanogaster
RGGKCAAAGGTCA

TGACCTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_1
0.778 0.643
Hnf4
M03936_2.00
Drosophila melanogaster
RGGKCAAAGTYCA

TGRACTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_2
0.778 0.643
Hnf4
M03937_2.00
Drosophila melanogaster
RGTVCAAAGKTCR

YGAMCTTTGBACY
SELEX
Nitta et al.(2015)
Hnf4_3
0.778 0.643
Hnf4
M03938_2.00
Drosophila melanogaster
RTGRACTTTGGACY

RGTCCAAAGTYCAY
SELEX
Nitta et al.(2015)
Hnf4_4
0.778 0.643
Hnf4
M06428_2.00
Drosophila melanogaster
DKNKWSSNGGGGTCA

TGACCCCNSSWMNMH
B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914
0.778 0.643
Hnf4
M06429_2.00
Drosophila melanogaster
GGGGTCAH

DTGACCCC
B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914
0.778 0.643
Hnf4a
M00182_2.00
Mus musculus
NNRGKYMRNN

NNYKRMCYNN
PBM
Badis et al.(2009)
Hnf4a_2640
0.765 0.629
HNF4A
M03357_2.00
Homo sapiens
RWTGRACTTTGSACYB

VRGTSCAAAGTYCAWY
SELEX
Jolma et al.(2013)
HNF4A_1
0.765 0.629
HNF4A
M03358_2.00
Homo sapiens
RRGGKCAAAGTCCRBN

NVYGGACTTTGMCCYY
SELEX
Jolma et al.(2013)
HNF4A_2
0.765 0.629
HNF4A
M03359_2.00
Homo sapiens
NDTGGACTTTGDACYB

VRGTHCAAAGTCCAHN
SELEX
Jolma et al.(2013)
HNF4A_3
0.765 0.629
HNF4A
M03360_2.00
Homo sapiens
RRGGTCAAAGKTCA

TGAMCTTTGACCYY
SELEX
Jolma et al.(2013)
HNF4A_4
0.765 0.629
HNF4A
M03361_2.00
Homo sapiens
VRGGTCAAAGTCCANN

NNTGGACTTTGACCYB
SELEX
Jolma et al.(2013)
HNF4A_5
0.765 0.629
HNF4A
M03362_2.00
Homo sapiens
RRGTYCAAAGKTCAH

DTGAMCTTTGRACYY
SELEX
Jolma et al.(2013)
HNF4A_6
0.765 0.629
Hnf4a
M03426_2.00
Mus musculus
RRGGTCAAAGTCCANN

NNTGGACTTTGACCYY
SELEX
Jolma et al.(2013)
Hnf4a_1
0.765 0.629
HNF4A
M05573_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1
0.765 0.629
HNF4A
M05574_2.00
Homo sapiens
RRGGTCAAAGTCCAH

DTGGACTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2
0.765 0.629
HNF4A
M05575_2.00
Homo sapiens
RRGTCCAAAGGTCRN

NYGACCTTTGGACYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3
0.765 0.629
HNF4A
M05576_2.00
Homo sapiens
DTGGACTTTGGACYY

RRGTCCAAAGTCCAH
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4
0.765 0.629
HNF4A
M08219_2.00
Homo sapiens
VRGDBCAAAGKYCAN

NTGRMCTTTGVHCYB
ChIP-seq
Contrino et al.(2012)
Mv81
0.765 0.629
HNF4A
M08220_2.00
Homo sapiens
AGTCCA

TGGACT
ChIP-seq
Contrino et al.(2012)
Mv82
0.765 0.629
HNF4A
M09268_2.00
Homo sapiens
VRGKNCAAAGTYCA

TGRACTTTGNMCYB
Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A
0.765 0.629
Hnf4a
M09308_2.00
Mus musculus
NRGKBCAAAGTYCA

TGRACTTTGVMCYN
Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A
0.765 0.629
HNF4A
M09605_2.00
Homo sapiens
NNVRGDNCAAAGKYCA

TGRMCTTTGNHCYBNN
Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021
0.765 0.629
HNF4A
M11105_2.00
Homo sapiens
VRGGNCAAAGKYCRB

VYGRMCTTTGNCCYB
Transfac
Matys et al.(2006)
V$HNF4_01_B
0.765 0.629
HNF4A
M11106_2.00
Homo sapiens
NNNRGDBYAAAGKBCANND

HNNTGVMCTTTRVHCYNNN
Transfac
Matys et al.(2006)
V$HNF4_01
0.765 0.629
HNF4A
M11107_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_09
0.765 0.629
HNF4A
M11108_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_10
0.765 0.629
HNF4A
M11109_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6
0.765 0.629
HNF4A
M11110_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_Q3
0.765 0.629
HNF4A
M11111_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_Q6_01
0.765 0.629
HNF4A
M11112_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_01
0.765 0.629
HNF4A
M11113_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_02
0.765 0.629
HNF4A
M11114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_03
0.765 0.629
HNF4A
M11115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_04
0.765 0.629
HNF4A
M05577_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1
0.765 0.629
HNF4A
M05578_2.00
Homo sapiens
RRGGTCAAAGTCCRN

NYGGACTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2
0.765 0.629
HNF4A
M05579_2.00
Homo sapiens
RRGTCCAAAGGTCRN

NYGACCTTTGGACYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3
0.765 0.629
HNF4A
M05580_2.00
Homo sapiens
DTGGACTTTGGACYY

RRGTCCAAAGTCCAH
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4
0.765 0.629
HNF4G
M08155_2.00
Homo sapiens
NVRGDNCAAAGKYCA

TGRMCTTTGNHCYBN
ChIP-seq
Mathelier et al.(2014)
MA0484.1
0.759 0.600
HNF4G
M09287_2.00
Homo sapiens
VRGDNCAAAGKYCA

TGRMCTTTGNHCYB
Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B
0.759 0.600
Hnf4g
M09307_2.00
Mus musculus
VRGDNCAAAGKYCA

TGRMCTTTGNHCYB
Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C
0.759 0.600
HNF4G
M11155_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4G_01
0.759 0.600
HNF4G
M11156_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4G_02
0.759 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN08474 Nuclear receptor 18 87

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL000792 Aedes aegypti AAEL000792 I
AAEL009473 Aedes aegypti AAEL009473 I
AALB009865 Anopheles albimanus AALB009865 I
AALB009868 Anopheles albimanus AALB009868 I
AARA000827 Anopheles arabiensis AARA000827 I
AARA005391 Anopheles arabiensis AARA005391 I
AARA005393 Anopheles arabiensis AARA005393 I
AARA011914 Anopheles arabiensis AARA011914 I
AATE012157 Anopheles atroparvus AATE012157 N
AC186524.3_FG005 Zea mays AC186524.3_FG005 N
ACAC_0000143401 Angiostrongylus cantonensis ACAC_0000143401 N
ACEP10855 Atta cephalotes ACEP10855 I
ACEP10859 Atta cephalotes ACEP10859 I
ACEP25270 Atta cephalotes ACEP25270 N
ACEP25857 Atta cephalotes ACEP25857 I
ACHR009359 Anopheles christyi ACHR009359 I
ACOM022800 Anopheles coluzzii ACOM022800 I
ACOM022803 Anopheles coluzzii ACOM022803 I
ACOM026664 Anopheles coluzzii ACOM026664 N
ACOM034662 Anopheles coluzzii ACOM034662 I
ACUA008554 Anopheles culicifacies ACUA008554 I
ACUA011783 Anopheles culicifacies ACUA011783 N
ACUA026266 Anopheles culicifacies ACUA026266 I
ACUA026638 Anopheles culicifacies ACUA026638 I
ADIR005630 Anopheles dirus ADIR005630 I
ADIR005633 Anopheles dirus ADIR005633 I
ADIR009659 Anopheles dirus ADIR009659 I
AEPI003628 Anopheles epiroticus AEPI003628 I
AEPI007651 Anopheles epiroticus AEPI007651 N
AEPI007946 Anopheles epiroticus AEPI007946 N
AEPI010515 Anopheles epiroticus AEPI010515 I
AFAF013723 Anopheles farauti AFAF013723 I
AFAF017335 Anopheles farauti AFAF017335 I
AFUN009319 Anopheles funestus AFUN009319 I
AFUN010196 Anopheles funestus AFUN010196 I
AFUN010199 Anopheles funestus AFUN010199 I
AGAP000922 Anopheles gambiae AGAP000922 I
AGAP010923 Anopheles gambiae AGAP010923 I
AGAP012033 Anopheles gambiae AGAP012033 I
AMAM006332 Anopheles maculatus AMAM006332 I
AMAM015893 Anopheles maculatus AMAM015893 I
AMAM018985 Anopheles maculatus AMAM018985 I
AMAM022760 Anopheles maculatus AMAM022760 N
AMEC008804 Anopheles melas AMEC008804 I
AMEC012053 Anopheles melas AMEC012053 I
AMEC014560 Anopheles melas AMEC014560 I
AMEC016085 Anopheles melas AMEC016085 I
AMEM010579 Anopheles merus AMEM010579 I
AMEM014190 Anopheles merus AMEM014190 I
AMEM017358 Anopheles merus AMEM017358 I
AMIN001219 Anopheles minimus AMIN001219 I
AMIN008219 Anopheles minimus AMIN008219 I
AMIN009301 Anopheles minimus AMIN009301 I
AMIN009304 Anopheles minimus AMIN009304 I
ANCCAN_22368 Ancylostoma caninum ANCCAN_22368 N
ANCDUO_17471 Ancylostoma duodenale ANCDUO_17471 I
ANCDUO_25812 Ancylostoma duodenale ANCDUO_25812 N
AQUA001259 Anopheles quadriannulatus AQUA001259 I
AQUA001262 Anopheles quadriannulatus AQUA001262 I
AQUA004309 Anopheles quadriannulatus AQUA004309 I
ASIS016076 Anopheles sinensis ASIS016076 N
ASIS021542 Anopheles sinensis ASIS021542 I
ASTEI06129 Anopheles stephensi ASTEI06129 N
ASTEI06407 Anopheles stephensi ASTEI06407 I
BGIBMGA003080 Bombyx mori BGIBMGA003080 I
BGIBMGA004367 Bombyx mori BGIBMGA004367 I
BGLB002734 Biomphalaria glabrata BGLB002734 I
BGLB010904 Biomphalaria glabrata BGLB010904 I
BN946_scf184985.g43 Trametes cinnabarina BN946_scf184985.g43 N
BOTBODRAFT_575815 Botryobasidium botryosum BOTBODRAFT_575815 N
CADAORAG00001679 Aspergillus oryzae CADAORAG00001679 N
Cflo_01077--XP_001122045.1_APIME Camponotus floridanus Cflo_01077--XP_001122045.1_APIME N
CGOC_0001130501 Cylicostephanus goldi CGOC_0001130501 I
CLEC006959 Cimex lectularius CLEC006959 I
CLEC006961 Cimex lectularius CLEC006961 I
CPIJ012042 Culex quinquefasciatus CPIJ012042 I
CPIJ012500 Culex quinquefasciatus CPIJ012500 N
CPIJ014016 Culex quinquefasciatus CPIJ014016 N
CPIJ014424 Culex quinquefasciatus CPIJ014424 I
CPIJ017659 Culex quinquefasciatus CPIJ017659 I
CpipJ_CPIJ012042 Culex pipiens CpipJ_CPIJ012042 I
CpipJ_CPIJ012500 Culex pipiens CpipJ_CPIJ012500 N
CpipJ_CPIJ014016 Culex pipiens CpipJ_CPIJ014016 N
CpipJ_CPIJ014424 Culex pipiens CpipJ_CPIJ014424 I
CpipJ_CPIJ017659 Culex pipiens CpipJ_CPIJ017659 I
CY34DRAFT_106474 Suillus luteus CY34DRAFT_106474 N
D918_08316 Trichuris suis D918_08316 N
DAPPUDRAFT_37735 Daphnia pulex DAPPUDRAFT_37735 I
EFV48447 Trichinella spiralis EFV48447 I
SOX1 Anolis carolinensis ENSACAG00000006346 I
ENSAMEG00000016773 Ailuropoda melanoleuca ENSAMEG00000016773 I
ENSAMXG00000007582 Astyanax mexicanus ENSAMXG00000007582 I
SOX4 Canis familiaris ENSCAFG00000024883 I
SOX4 Choloepus hoffmanni ENSCHOG00000002300 I
SOX6 Choloepus hoffmanni ENSCHOG00000005751 I
ENSCPOG00000024750 Cavia porcellus ENSCPOG00000024750 I
ENSCSAVG00000000494 Ciona savignyi ENSCSAVG00000000494 I
ENSCSAVG00000009278 Ciona savignyi ENSCSAVG00000009278 I
sox9b Danio rerio ENSDARG00000043923 I
SOX9 Dasypus novemcinctus ENSDNOG00000033826 I
ENSDNOG00000034433 Dasypus novemcinctus ENSDNOG00000034433 N
ENSDORG00000003967 Dipodomys ordii ENSDORG00000003967 I
ENSDORG00000012440 Dipodomys ordii ENSDORG00000012440 I
SOX6 Erinaceus europaeus ENSEEUG00000006749 I
SOX10 Erinaceus europaeus ENSEEUG00000011263 I
SOX6 Echinops telfairi ENSETEG00000001898 I
ENSFALG00000002572 Ficedula albicollis ENSFALG00000002572 I
SOX13 Felis catus ENSFCAG00000002900 I
ENSLOCG00000004648 Lepisosteus oculatus ENSLOCG00000004648 I
ENSMEUG00000008151 Macropus eugenii ENSMEUG00000008151 I
ENSMEUG00000015665 Macropus eugenii ENSMEUG00000015665 I
SOX10 Meleagris gallopavo ENSMGAG00000012508 I
SOX13 Microcebus murinus ENSMICG00000009236 I
ENSNLEG00000009528 Nomascus leucogenys ENSNLEG00000009528 I
ENSOARG00000009998 Ovis aries ENSOARG00000009998 I
SOX10 Ochotona princeps ENSOPRG00000013575 I
ENSP00000244745 Macaca fascicularis ENSP00000244745 I
SOX6 Procavia capensis ENSPCAG00000001398 N
SOX17 Procavia capensis ENSPCAG00000003188 I
SOX10 Procavia capensis ENSPCAG00000005913 I
ENSPMAG00000010371 Petromyzon marinus ENSPMAG00000010371 I
ENSPSIG00000009504 Pelodiscus sinensis ENSPSIG00000009504 I
ENSPTRG00000005969 Pan troglodytes ENSPTRG00000005969 I
SOX3 Pteropus vampyrus ENSPVAG00000003166 I
SOX9 Pteropus vampyrus ENSPVAG00000010505 I
SOX5 Sorex araneus ENSSARG00000007963 I
SOX12 Sus scrofa ENSSSCG00000021920 I
SOX6 Tupaia belangeri ENSTBEG00000002476 I
ENSTGUG00000002931 Taeniopygia guttata ENSTGUG00000002931 I
ENSTSYG00000012536 Tarsius syrichta ENSTSYG00000012536 I
ENSTTRG00000005878 Tursiops truncatus ENSTTRG00000005878 I
ENSVPAG00000000908 Vicugna pacos ENSVPAG00000000908 I
estExt_fgenesh1_pg.C_90036 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_90036 N
Sox100B Drosophila melanogaster FBgn0024288 I
GA13810 Drosophila pseudoobscura FBgn0073845 I
GF18413 Drosophila ananassae FBgn0095431 I
GG11790 Drosophila erecta FBgn0104085 I
GH13971 Drosophila grimshawi FBgn0121447 I
GI22315 Drosophila mojavensis FBgn0145043 I
GL13537 Drosophila persimilis FBgn0151142 I
GL20955 Drosophila persimilis FBgn0158550 I
GM12920 Drosophila sechellia FBgn0167852 I
GD21559 Drosophila simulans FBgn0192984 I
GJ10502 Drosophila virilis FBgn0197782 I
GK22609 Drosophila willistoni FBgn0224586 I
GE10918 Drosophila yakuba FBgn0228750 I
GB40960 Apis mellifera GB40960 I
genemark-nMf.1.1.scaf16788-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf16788-processed-gene-0.1 I
Gfo_R009506 Geospiza fortis Gfo_R009506 I
GLOINDRAFT_28614 Rhizophagus irregularis GLOINDRAFT_28614 N
GLOINDRAFT_339213 Rhizophagus irregularis GLOINDRAFT_339213 N
Hba_12930 Heterorhabditis bacteriophora Hba_12930 I
HelroG148142 Helobdella robusta HelroG148142 I
HelroG148167 Helobdella robusta HelroG148167 I
HelroG148277 Helobdella robusta HelroG148277 N
HMEL016850 Heliconius melpomene HMEL016850 I
Hsal_04214--XP_001122045.1_APIME Harpegnathos saltator Hsal_04214--XP_001122045.1_APIME N
Hsal_04828--XP_001122993.1_APIME Harpegnathos saltator Hsal_04828--XP_001122993.1_APIME I
ISCW009925 Ixodes scapularis ISCW009925 I
KGM_05609 Danaus plexippus KGM_05609 N
L798_02392 Zootermopsis nevadensis L798_02392 I
L798_04020 Zootermopsis nevadensis L798_04020 N
L798_09360 Zootermopsis nevadensis L798_09360 N
L798_12045 Zootermopsis nevadensis L798_12045 I
L898_g3197 Steinernema monticolum L898_g3197 I
LCUP000040 Lucilia cuprina LCUP000040 I
LCUP001585 Lucilia cuprina LCUP001585 I
LDEC007549 Leptinotarsa decemlineata LDEC007549 N
LLOJ005525 Lutzomyia longipalpis LLOJ005525 I
LotgiG88815 Lottia gigantea LotgiG88815 I
M404DRAFT_79773 Pisolithus tinctorius M404DRAFT_79773 N
MCINX002905 Melitaea cinxia MCINX002905 I
MDOA000072 Musca domestica MDOA000072 I
MESCA000459 Megaselia scalaris MESCA000459 I
MESCA009852 Megaselia scalaris MESCA009852 I
ML23337a Mnemiopsis leidyi ML23337a N
MPER_07337 Moniliophthora perniciosa MPER_07337 N
NBR_0000360901 Nippostrongylus brasiliensis NBR_0000360901 I
NBR_0002216901 Nippostrongylus brasiliensis NBR_0002216901 I
nDi.2.2.2.g10379 Dirofilaria immitis nDi.2.2.2.g10379 I
NECAME_00080 Necator americanus NECAME_00080 I
nLs.2.1.2.g10155 Litomosoides sigmodontis nLs.2.1.2.g10155 I
Ocbimv22020621m.g Octopus bimaculoides Ocbimv22020621m.g N
PEQ_0000771101 Parascaris equorum PEQ_0000771101 I
PHACADRAFT_58554 Phanerochaete carnosa PHACADRAFT_58554 N
PHUM433270 Pediculus humanus PHUM433270 N
PPAI008595 Phlebotomus papatasi PPAI008595 N
PPAI009257 Phlebotomus papatasi PPAI009257 N
RO3G_05566 Rhizopus oryzae RO3G_05566 N
RPRC012125 Rhodnius prolixus RPRC012125 N
RPRC012780 Rhodnius prolixus RPRC012780 I
RPRC014334 Rhodnius prolixus RPRC014334 I
SINV16626 Solenopsis invicta SINV16626 I
SINV19744 Solenopsis invicta SINV19744 I
SINV19753 Solenopsis invicta SINV19753 I
SMAR010127 Strigamia maritima SMAR010127 N
Smp_148110 Schistosoma mansoni Smp_148110 I
SPER_0000213401 Spirometra erinaceieuropaei SPER_0000213401 N
SS1G_05340 Sclerotinia sclerotiorum SS1G_05340 N
TC003791 Tribolium castaneum TC003791 I
TC009854 Tribolium castaneum TC009854 I
TCLT_0000083701 Thelazia callipaeda TCLT_0000083701 I
THITE_2010224 Thielavia terrestris THITE_2010224 N
TPHA_0C04350 Tetrapisispora phaffii TPHA_0C04350 N
WUBG_09252 Wuchereria bancrofti WUBG_09252 I
XP_002935939 Xenopus tropicalis XP_002935939 I
YQE_08560 Dendroctonus ponderosae YQE_08560 I
YQE_13042 Dendroctonus ponderosae YQE_13042 I