CBN30153 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN30153 T301864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-6
M01298_2.00 		Caenorhabditis elegans
AAAKGTCA
TGACMTTT		 PBM
Lambert et al.(2019)
pTH9944 		0.990 0.886
Hr38
M03939_2.00 		Drosophila melanogaster
NAAAGGTCA
TGACCTTTN		 SELEX
Nitta et al.(2015)
Hr38_1 		0.955 0.771
Nr4a2
M00818_2.00 		Mus musculus
AAAGGTCA
TGACCTTT		 PBM
Weirauch et al.(2013)
pTH3467 		0.945 0.757
NR4A2
M03383_2.00 		Homo sapiens
AGGTCAHNNNDTGACCT
AGGTCAHNNNDTGACCT		 SELEX
Jolma et al.(2013)
NR4A2_1 		0.945 0.757
NR4A2
M03384_2.00 		Homo sapiens
TGACCTTTAAAGGTCA
TGACCTTTAAAGGTCA		 SELEX
Jolma et al.(2013)
NR4A2_2 		0.945 0.757
NR4A2
M03385_2.00 		Homo sapiens
NBTAAAGGTCA
TGACCTTTAVN		 SELEX
Jolma et al.(2013)
NR4A2_3 		0.945 0.757
NR4A2
M05639_2.00 		Homo sapiens
NWAAKGTCAN
NTGACMTTWN		 SELEX
Yin et al.(2017)
NR4A2_eDBD_HT-SELEX 		0.945 0.757
NR4A2
M05881_2.00 		Homo sapiens
NAAAKGTYA
TRACMTTTN		 SMiLE-seq
Isakova et al.(2017)
NR4A2 		0.945 0.757
NR4A2
M09286_2.00 		Homo sapiens
RAAGGTCAV
BTGACCTTY		 Misc
Kulakovskiy et al.(2013)
NR4A2_HUMAN.H11MO.0.C 		0.945 0.757
Nr4a2
M09323_2.00 		Mus musculus
RAAGGTCAV
BTGACCTTY		 Misc
Kulakovskiy et al.(2013)
NR4A2_MOUSE.H11MO.0.C 		0.945 0.757
NR4A2
M11151_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NURR1_Q3_01 		0.945 0.757
NR4A2
M11152_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NURR1_Q3 		0.945 0.757
NR4A2
M08461_2.00 		Homo sapiens
RAGGTCAM
KTGACCTY		 COMPILED
Mathelier et al.(2014)
MA0160.1 		0.945 0.757
NR4A2
M05640_2.00 		Homo sapiens
NAAAGGTCRN
NYGACCTTTN		 SELEX
Yin et al.(2017)
NR4A2_eDBD_Methyl-HT-SELEX 		0.945 0.757
NR4A1
M05601_2.00 		Homo sapiens
NAAAGGTCAN
NTGACCTTTN		 SELEX
Yin et al.(2017)
NR4A1_eDBD_HT-SELEX_1 		0.936 0.743
NR4A1
M05602_2.00 		Homo sapiens
NAAAGGTCAN
NTGACCTTTN		 SELEX
Yin et al.(2017)
NR4A1_eDBD_HT-SELEX_2 		0.936 0.743
NR4A1
M08153_2.00 		Homo sapiens
NAAAGGTCAN
NTGACCTTTN		 ChIP-seq
Mathelier et al.(2014)
MA1112.1 		0.936 0.743
NR4A1
M09274_2.00 		Homo sapiens
AAAKGBCAN
NTGVCMTTT		 Misc
Kulakovskiy et al.(2013)
NR4A1_HUMAN.H11MO.0.A 		0.936 0.743
Nr4a1
M09317_2.00 		Mus musculus
NRAADGKCA
TGMCHTTYN		 Misc
Kulakovskiy et al.(2013)
NR4A1_MOUSE.H11MO.0.B 		0.936 0.743
NR4A1
M09608_2.00 		Homo sapiens
NNDNAAAGGTCA
TGACCTTTNHNN		 Misc
Heinz et al.(2010)
K562-NR4A1_GSE31363 		0.936 0.743
NR4A1
M11132_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NUR77_Q5_01 		0.936 0.743
NR4A1
M11133_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NUR77_Q5_02 		0.936 0.743
NR4A1
M11134_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NUR77_Q5 		0.936 0.743
NR4A1
M05603_2.00 		Homo sapiens
NAAAGGTCRN
NYGACCTTTN		 SELEX
Yin et al.(2017)
NR4A1_eDBD_Methyl-HT-SELEX_1 		0.936 0.743
NR4A1
M05604_2.00 		Homo sapiens
NAAAGGTCRN
NYGACCTTTN		 SELEX
Yin et al.(2017)
NR4A1_eDBD_Methyl-HT-SELEX_2 		0.936 0.743
Q95WG3_ACRMI
M02424_2.00 		Acropora millepora
NRAGGTCAN
NTGACCTYN		 PBM
Weirauch et al.(2014)
pTH6144 		0.867 0.614
Hr4
M06435_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546 		0.826 0.571
Rxra
M00181_2.00 		Mus musculus
NRRGGTCANN
NNTGACCYYN		 PBM
Badis et al.(2009)
Rxra_1035 		0.788 0.600
RXRA
M03408_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRA_1 		0.788 0.600
RXRA
M03409_2.00 		Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY		 SELEX
Jolma et al.(2013)
RXRA_2 		0.788 0.600
RXRA
M03410_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRA_3 		0.788 0.600
RXRA
M03411_2.00 		Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY		 SELEX
Jolma et al.(2013)
RXRA_4 		0.788 0.600
Rxra
M03421_2.00 		Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
Rxra_1 		0.788 0.600
Rxra
M03422_2.00 		Mus musculus
RGGTCATGACCY
RGGTCATGACCY		 SELEX
Jolma et al.(2013)
Rxra_2 		0.788 0.600
RXRA
M05671_2.00 		Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX 		0.788 0.600
RXRA
M05882_2.00 		Homo sapiens
VRGKTBAAAGGTYRH
DYRACCTTTVAMCYB		 SMiLE-seq
Isakova et al.(2017)
RXRa 		0.788 0.600
RXRA
M07993_2.00 		Homo sapiens
NRRGGTCA
TGACCYYN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha 		0.788 0.600
RXRA
M07994_2.00 		Homo sapiens
DDNNMRRGGTCANDN
NHNTGACCYYKNNHH		 ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha 		0.788 0.600
RXRA
M09294_2.00 		Homo sapiens
VDDDNDNNVRRRGGKCAVDV
BHBTGMCCYYYBNNHNHHHB		 Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A 		0.788 0.600
Rxra
M09306_2.00 		Mus musculus
DDVNNNNNRAGKTCAAGGYCA
TGRCCTTGAMCTYNNNNNBHH		 Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A 		0.788 0.600
RXRA
M11182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RXRA_07 		0.788 0.600
RXRA
M05672_2.00 		Homo sapiens
RRGGTCAAAGGTCAH
DTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX 		0.788 0.600
Rxrb
M02402_2.00 		Mus musculus
VRGGTCAH
DTGACCYB		 PBM
Weirauch et al.(2014)
pTH2861 		0.784 0.571
RXRB
M03415_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRB_1 		0.784 0.571
Rxrb
M03435_2.00 		Mus musculus
GRGGTCAAAGGTCA
TGACCTTTGACCYC		 SELEX
Jolma et al.(2013)
Rxrb_1 		0.784 0.571
RXRB
M05681_2.00 		Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_1 		0.784 0.571
RXRB
M05682_2.00 		Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_2 		0.784 0.571
RXRB
M09297_2.00 		Homo sapiens
DSAGGTCASD
HSTGACCTSH		 Misc
Kulakovskiy et al.(2013)
RXRB_HUMAN.H11MO.0.C 		0.784 0.571
Rxrb
M09330_2.00 		Mus musculus
DSAGGTCASD
HSTGACCTSH		 Misc
Kulakovskiy et al.(2013)
RXRB_MOUSE.H11MO.0.C 		0.784 0.571
RXRB
M05683_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_1 		0.784 0.571
RXRB
M05684_2.00 		Homo sapiens
RRGGTCRYGACCYY
RRGGTCRYGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_2 		0.784 0.571
usp
M03934_2.00 		Drosophila melanogaster
ARRGGTCAAAGGTCA
TGACCTTTGACCYYT		 SELEX
Nitta et al.(2015)
usp_1 		0.783 0.614
usp
M06426_2.00 		Drosophila melanogaster
HRRGGTCAH
DTGACCYYD		 B1H
Zhu et al.(2011)
usp_SANGER_5_FBgn0003964 		0.783 0.614
usp
M02709_2.00 		Drosophila melanogaster
GGGGTCACSN
NSGTGACCCC		 SELEX
Mathelier et al.(2014)
MA0016.1 		0.783 0.614
usp
M09689_2.00 		Drosophila melanogaster
KRGGTCACG
CGTGACCYM		 Misc
Kulakovskiy et al.(2009)
usp 		0.783 0.614
usp
M11191_2.00 		Drosophila melanogaster
GRGGTCAYS
SRTGACCYC		 Transfac
Matys et al.(2006)
I$CF1_01 		0.783 0.614
usp
M11192_2.00 		Drosophila melanogaster
GGGGTCAYS
SRTGACCCC		 Transfac
Matys et al.(2006)
I$CF1_02 		0.783 0.614
Rxrg
M02400_2.00 		Mus musculus
VRGGTCAN
NTGACCYB		 PBM
Weirauch et al.(2014)
pTH2880 		0.782 0.586
RXRG
M03375_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRG_1 		0.782 0.586
RXRG
M03376_2.00 		Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY		 SELEX
Jolma et al.(2013)
RXRG_2 		0.782 0.586
RXRG
M03377_2.00 		Homo sapiens
GRGGTCAAAGGTCA
TGACCTTTGACCYC		 SELEX
Jolma et al.(2013)
RXRG_3 		0.782 0.586
RXRG
M03378_2.00 		Homo sapiens
NRGGTCATGACCYC
GRGGTCATGACCYN		 SELEX
Jolma et al.(2013)
RXRG_4 		0.782 0.586
RXRG
M02746_2.00 		Homo sapiens
GGTCAAAGGTCA
TGACCTTTGACC		 SELEX
Jolma et al.(2010)
RXRG_dimer 		0.782 0.586
RXRG
M05615_2.00 		Homo sapiens
VRGGTCAAAGGTCAN
NTGACCTTTGACCYB		 SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_1 		0.782 0.586
RXRG
M05616_2.00 		Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY		 SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_2 		0.782 0.586
RXRG
M05879_2.00 		Homo sapiens
RGGTBAARGGTBRND
HNYVACCYTTVACCY		 SMiLE-seq
Isakova et al.(2017)
RXRg 		0.782 0.586
RXRG
M09280_2.00 		Homo sapiens
NGTCAAAGGTCAH
DTGACCTTTGACN		 Misc
Kulakovskiy et al.(2013)
RXRG_HUMAN.H11MO.0.B 		0.782 0.586
Rxrg
M09305_2.00 		Mus musculus
VDDVDNSVNRAGKTCAAGGYCA
TGRCCTTGAMCTYNBSNHBHHB		 Misc
Kulakovskiy et al.(2013)
RXRG_MOUSE.H11MO.0.B 		0.782 0.586
RXRG
M05617_2.00 		Homo sapiens
DRGGTBAARGGTBRN
NYVACCYTTVACCYH		 SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_1 		0.782 0.586
RXRG
M05618_2.00 		Homo sapiens
VRGGTCAYGACCYB
VRGGTCRTGACCYB		 SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_2 		0.782 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN30153 Nuclear receptor 311 380

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

704 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AACERI_AaceriAAR026W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAR026W I
Aan_R000440 Calypte anna Aan_R000440 I
Afo_R001715 Aptenodytes forsteri Afo_R001715 I
AGOS_AAR026W Ashbya gossypii AGOS_AAR026W I
Alligator_sinensis_CCG000124.1 Alligator sinensis Alligator_sinensis_CCG000124.1 I
Brh_R002687 Buceros rhinoceros Brh_R002687 I
CANTEDRAFT_136140 Candida tenuis CANTEDRAFT_136140 I
CGI_10003963 Crassostrea gigas CGI_10003963 I
Cmyd_10005373 Chelonia mydas Cmyd_10005373 I
csin104163 Clonorchis sinensis csin104163 I
D915_09544 Fasciola hepatica D915_09544 I
DAPPUDRAFT_313324 Daphnia pulex DAPPUDRAFT_313324 I
DICSQDRAFT_40774 Dichomitus squalens DICSQDRAFT_40774 I
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I
Ecym_1257 Eremothecium cymbalariae Ecym_1257 I
HBP1 Anolis carolinensis ENSACAG00000015023 I
ENSAMEG00000013492 Ailuropoda melanoleuca ENSAMEG00000013492 I
ENSAMXG00000017678 Astyanax mexicanus ENSAMXG00000017678 I
ENSAPLG00000007110 Anas platyrhynchos ENSAPLG00000007110 I
HBP1 Bos taurus ENSBTAG00000005524 I
ENSBTAP00000044156-D1 Bos grunniens ENSBTAP00000044156-D1 I
HBP1 Canis familiaris ENSCAFG00000003939 I
HBP1 Callithrix jacchus ENSCJAG00000016260 I
HBP1 Cavia porcellus ENSCPOG00000002375 I
ENSCSAG00000011395 Chlorocebus sabaeus ENSCSAG00000011395 I
hbp1 Danio rerio ENSDARG00000028517 I
HBP1 Dasypus novemcinctus ENSDNOG00000004405 I
Hbp1 Dipodomys ordii ENSDORG00000010576 I
HBP1 Equus caballus ENSECAG00000020969 I
HBP1 Echinops telfairi ENSETEG00000018542 I
ENSFALG00000010259 Ficedula albicollis ENSFALG00000010259 I
HBP1 Felis catus ENSFCAG00000005858 I
HBP1 Homo sapiens ENSG00000105856 D
hbp1 Gasterosteus aculeatus ENSGACG00000010054 I
ENSGACG00000019192 Gasterosteus aculeatus ENSGACG00000019192 I
HBP1 Gallus gallus ENSGALG00000008050 I
HBP1 Gorilla gorilla ENSGGOG00000007788 I
ENSGMOG00000013782 Gadus morhua ENSGMOG00000013782 I
ENSLACG00000009119 Latimeria chalumnae ENSLACG00000009119 I
HBP1 Loxodonta africana ENSLAFG00000005317 I
ENSMEUG00000011116 Macropus eugenii ENSMEUG00000011116 I
HBP1 Meleagris gallopavo ENSMGAG00000006880 I
HBP1 Microcebus murinus ENSMICG00000012858 I
HBP1 Myotis lucifugus ENSMLUG00000012425 I
HBP1 Macaca mulatta ENSMMUG00000015409 I
HBP1 Monodelphis domestica ENSMODG00000016376 I
ENSMPUG00000018249 Mustela putorius furo ENSMPUG00000018249 I
Hbp1 Mus musculus ENSMUSG00000002996 D
ENSNLEG00000008761 Nomascus leucogenys ENSNLEG00000008761 I
HBP1 Ornithorhynchus anatinus ENSOANG00000003174 I
ENSOARG00000005055 Ovis aries ENSOARG00000005055 I
HBP1 Oryctolagus cuniculus ENSOCUG00000012758 I
HBP1 Otolemur garnettii ENSOGAG00000013102 I
ENSONIG00000008523 Oreochromis niloticus ENSONIG00000008523 I
ENSONIG00000011868 Oreochromis niloticus ENSONIG00000011868 I
hbp1 Oryzias latipes ENSORLG00000004396 I
ENSORLG00000009474 Oryzias latipes ENSORLG00000009474 I
ENSP00000420500 Macaca fascicularis ENSP00000420500 I
ENSPANG00000024385 Papio anubis ENSPANG00000024385 I
HBP1 Procavia capensis ENSPCAG00000014060 I
ENSPFOG00000003951 Poecilia formosa ENSPFOG00000003951 I
ENSPFOG00000012271 Poecilia formosa ENSPFOG00000012271 I
ENSPMAG00000002631 Petromyzon marinus ENSPMAG00000002631 I
ENSPPYG00000017898 Pongo abelii ENSPPYG00000017898 I
ENSPSIG00000012478 Pelodiscus sinensis ENSPSIG00000012478 I
HBP1 Pan troglodytes ENSPTRG00000019575 I
HBP1 Pteropus vampyrus ENSPVAG00000014543 I
Hbp1 Rattus norvegicus ENSRNOG00000008927 I
HBP1 Sorex araneus ENSSARG00000007731 I
ENSSHAG00000010948 Sarcophilus harrisii ENSSHAG00000010948 I
ENSSTOG00000013846 Ictidomys tridecemlineatus ENSSTOG00000013846 I
HBP1 Tupaia belangeri ENSTBEG00000007793 I
HBP1 Taeniopygia guttata ENSTGUG00000003100 I
ENSTNIG00000002023 Tetraodon nigroviridis ENSTNIG00000002023 I
hbp1 Tetraodon nigroviridis ENSTNIG00000016027 I
ENSTRUG00000011881 Takifugu rubripes ENSTRUG00000011881 I
hbp1 Takifugu rubripes ENSTRUG00000016990 I
ENSTSYG00000010057 Tarsius syrichta ENSTSYG00000010057 I
HBP1 Tursiops truncatus ENSTTRG00000006826 I
HBP1 Vicugna pacos ENSVPAG00000008629 I
ENSXMAG00000007586 Xiphophorus maculatus ENSXMAG00000007586 I
ENSXMAG00000016455 Xiphophorus maculatus ENSXMAG00000016455 I
e_gw.61.169.1 Branchiostoma floridae e_gw.61.169.1 I
e_gw.633.29.1 Branchiostoma floridae e_gw.633.29.1 I
GI22721 Drosophila mojavensis FBgn0145448 I
GL12097 Drosophila persimilis FBgn0149705 I
GA30228 Drosophila pseudoobscura FBgn0263363 I
GB51010 Apis mellifera GB51010 I
Gfo_R011321 Geospiza fortis Gfo_R011321 I
HelroG148167 Helobdella robusta HelroG148167 I
ISCW021979 Ixodes scapularis ISCW021979 I
L798_09303 Zootermopsis nevadensis L798_09303 I
ML040423a Mnemiopsis leidyi ML040423a I
Myotis_brandtii_HBP1_10033916 Myotis brandtii Myotis_brandtii_HBP1_10033916 I
NEMVEDRAFT_v1g120503 Nematostella vectensis NEMVEDRAFT_v1g120503 I
PHUM534240 Pediculus humanus PHUM534240 I
Pvit_03004 Pogona vitticeps Pvit_03004 I
SMAR013235 Strigamia maritima SMAR013235 I
Smp_148110 Schistosoma mansoni Smp_148110 I
SNAPOd2T00000335001 Oikopleura dioica SNAPOd2T00000335001 I
T265_01499 Opisthorchis viverrini T265_01499 I
Tal_R010197 Tyto alba Tal_R010197 I
tetur23g00840 Tetranychus urticae tetur23g00840 I
TriadG55419 Trichoplax adhaerens TriadG55419 I
hbp1.S Xenopus laevis XB-GENE-17342930 I
hbp1 Xenopus tropicalis XB-GENE-950343 I
hbp1.L Xenopus laevis XB-GENE-950348 I
XP_002155149.1 Hydra magnipapillata XP_002155149.1 I
ZBAI_00389 Zygosaccharomyces bailii ZBAI_00389 I
ZBAI_05541 Zygosaccharomyces bailii ZBAI_05541 I
ZYRO0C16214g Zygosaccharomyces rouxii ZYRO0C16214g I