GA18381 (Drosophila pseudoobscura)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 FBgn0078384 T305299_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
kni
M06557_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Mathelier et al.(2014)
MA0451.1 		0.989 0.971
kni
M06419_2.00 		Drosophila melanogaster
RAWNKVGNWC
GWNCBMNWTY		 B1H
Zhu et al.(2011)
kni_FlyReg_FBgn0001320 		0.989 0.971
kni
M06420_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Zhu et al.(2011)
kni_NAR_FBgn0001320 		0.989 0.971
kni
M06421_2.00 		Drosophila melanogaster
RWAANTRGRNCA
TGNYCYANTTWY		 B1H
Zhu et al.(2011)
kni_SANGER_5_FBgn0001320 		0.989 0.971
kni
M08225_2.00 		Drosophila melanogaster
YAGNGYTGYC
GRCARCNCTR		 ChIP-seq
Contrino et al.(2012)
Mf24 		0.989 0.971
kni
M09687_2.00 		Drosophila melanogaster
NAAWNKRGADCAV
BTGHTCYMNWTTN		 Misc
Kulakovskiy et al.(2009)
kni 		0.989 0.971
kni
M11189_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$KNI_Q6 		0.989 0.971
AGAP010438
M02389_2.00 		Anopheles gambiae
NRGDKCRNN
NNYGMHCYN		 PBM
Weirauch et al.(2014)
pTH6429 		0.983 0.857
knrl
M03930_2.00 		Drosophila melanogaster
AWNTRGRKCAN
NTGMYCYANWT		 SELEX
Nitta et al.(2015)
knrl_1 		0.981 0.843
knrl
M03931_2.00 		Drosophila melanogaster
AWBBGTAACR
YGTTACVVWT		 SELEX
Nitta et al.(2015)
knrl_2 		0.981 0.843
knrl
M06422_2.00 		Drosophila melanogaster
AAABTRGRKCA
TGMYCYAVTTT		 B1H
Zhu et al.(2011)
knrl_SANGER_5_FBgn0001323 		0.981 0.843
eg
M03927_2.00 		Drosophila melanogaster
NAAAYTRGAKCA
TGMTCYARTTTN		 SELEX
Nitta et al.(2015)
eg_1 		0.958 0.814
eg
M06415_2.00 		Drosophila melanogaster
RAAANTAGRGCAV
BTGCYCTANTTTY		 B1H
Zhu et al.(2011)
eg_SANGER_5_FBgn0000560 		0.958 0.814
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0286048 Nuclear receptor 8 78

Links

Other Nuclear receptor family TFs
Other Drosophila pseudoobscura TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_007_00960 Aquilegia coerulea Aquca_007_00960 N
FRS5 Arabidopsis thaliana AT4G38180 N
Bo3g034290 Brassica oleracea Bo3g034290 N
Bostr.25542s0007 Boechera stricta Bostr.25542s0007 N
Carubv10007256m.g Capsella rubella Carubv10007256m.g N
cassava23399.valid.m1 Manihot esculenta cassava23399.valid.m1 N
cassava9536.m1 Manihot esculenta cassava9536.m1 N
Ciclev10027888m.g Citrus clementina Ciclev10027888m.g N
Cla015971 Citrullus lanatus Cla015971 N
Cucsa.099970 Cucumis sativus Cucsa.099970 N
Eucgr.I01547 Eucalyptus grandis Eucgr.I01547 N
evm.TU.supercontig_60.4 Carica papaya evm.TU.supercontig_60.4 N
gene12983-v1.0-hybrid Fragaria vesca gene12983-v1.0-hybrid N
gene17117-v1.0-hybrid Fragaria vesca gene17117-v1.0-hybrid N
GLYMA01G00321 Glycine max GLYMA01G00321 N
GLYMA11G09400 Glycine max GLYMA11G09400 N
GLYMA14G00240 Glycine max GLYMA14G00240 N
Gorai.013G065300 Gossypium raimondii Gorai.013G065300 N
MDP0000200105 Malus domestica MDP0000200105 N
MDP0000261311 Malus domestica MDP0000261311 N
MDP0000308670 Malus domestica MDP0000308670 N
mgf015959m Mimulus guttatus mgf015959m N
PK08522.1 Cannabis sativa PK08522.1 N
Pm020704 Prunus mume Pm020704 N
Pm026968 Prunus mume Pm026968 N
POPTR_0004s21880 Populus trichocarpa POPTR_0004s21880 N
POPTR_0009s17110 Populus trichocarpa POPTR_0009s17110 N
POPTR_0011s14880 Populus trichocarpa POPTR_0011s14880 N
PRUPE_ppa001597mg Prunus persica PRUPE_ppa001597mg N
PRUPE_ppa001606mg Prunus persica PRUPE_ppa001606mg N
SapurV1A.0047s0510 Salix purpurea SapurV1A.0047s0510 N
SapurV1A.0216s0420 Salix purpurea SapurV1A.0216s0420 N
SapurV1A.2929s0020 Salix purpurea SapurV1A.2929s0020 N
Solyc01g112320.2 Solanum lycopersicum Solyc01g112320.2 N
TCM_007609 Theobroma cacao TCM_007609 N
Thhalv10024456m.g Eutrema salsugineum Thhalv10024456m.g N
FRS5 Vitis vinifera VIT_03s0038g04140 N
VIT_04s0044g01920 Vitis vinifera VIT_04s0044g01920 N